Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0051
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   3e-15
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             29   3.7  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_34104| Best HMM Match : SH2 (HMM E-Value=1.6e-24)                   28   6.4  

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 3/59 (5%)
 Frame = +1

Query: 67  PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 234
           PF DA K    S   VQ  ++HVRIQQRNGRKTLTT+QG+S EYD KK+V+A KK+FAC
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGISDEYDKKKLVKAFKKQFAC 540



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = +2

Query: 254 PEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 364
           PEYGE +QLQGDQR +  ++L +  L K +Q+KVHGF
Sbjct: 548 PEYGECIQLQGDQRAHAQEFLLQIDLAKKDQIKVHGF 584


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 266  EVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF*AALLKHNMSTLNI 406
            +VL+    QR++  QW    G+V+P QL      A   +  M+ LN+
Sbjct: 1157 KVLEFVAIQRKDNNQWAIPGGMVEPGQLVTQALKAEFGEEAMAKLNV 1203


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 6   VETKRPYVQSYVHPESQ---HIRPIRRCYQKLGGRRSRWFSPRPYPATKRA*DADYGARP 176
           VE +   V+  +  ES    +IR   RC+Q    +R+  F  RP+P T+   D     RP
Sbjct: 49  VEVREDEVKERIRAESLANVNIRWHGRCHQSNTSKRNLSFVKRPFPTTQAENDEPEPRRP 108


>SB_34104| Best HMM Match : SH2 (HMM E-Value=1.6e-24)
          Length = 421

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 298 LSLVALKLQHLAVLRCSTTVPCTRTPSCMPARSSSG 191
           + LV    QHL  L    T+PC+R+P  +P R  SG
Sbjct: 81  VELVQHHQQHLDGLLSRLTIPCSRSPGILP-RCYSG 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,159,454
Number of Sequences: 59808
Number of extensions: 471491
Number of successful extensions: 2736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2736
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)