Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0050
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)                 28   8.7  

>SB_52614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -3

Query: 671 KHIFIYCRIEVNELAISGV*LLSESIGIRKSRC 573
           K+I +  R+ VN+L  SGV  L ES    KSRC
Sbjct: 195 KNIILSGRVNVNQLNASGVTALHESSYEGKSRC 227


>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 463 KTNFFIVEVFTKIRCGFGTLLVASHRY*YSARLIFTLHLDFLMPMDSD 606
           K+N F   V     C FG     + +  Y A +I++L  D ++ M+SD
Sbjct: 51  KSNMFWFLVIEDGGCSFGEKAYMAQKGEYDAAIIYSLTSDKIIDMESD 98


>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
          Length = 330

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 131 TCNFVIEKCFRKKRFLPRRSGRALENARPQKQACGA 24
           T    +++C R +R   RR     ENA P + AC A
Sbjct: 152 TIGHYVKECTRPRRRPHRRRRDDFENAPPNRSACSA 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,871,331
Number of Sequences: 59808
Number of extensions: 391757
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)