Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0048
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.)               88   4e-18
SB_10170| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   3.3  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_4777| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  

>SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 43/84 (51%), Positives = 53/84 (63%)
 Frame = +1

Query: 256 PDTYPPSTAPAQHLFVHIGGTVTYADPLLESVDVQQKNDKFPXXXXXXXXXXXXXPRNAF 435
           PDTY       +HLFVH+G    ++DPLLE+VD++Q  DKFP             P+  F
Sbjct: 192 PDTYH------KHLFVHLGHNTNFSDPLLEAVDIRQIYDKFPEKKGGLKDMYDKGPQAVF 245

Query: 436 FLVKFWADLNTNNLDDPGAFYGVT 507
           FLVKFWADLNTN  D+ GAFYGV+
Sbjct: 246 FLVKFWADLNTNIHDETGAFYGVS 269



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 513 YESNENMTITCST 551
           YES+ENMTITCST
Sbjct: 272 YESSENMTITCST 284


>SB_10170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 454 ADLNTNNLDDPGAFYGVT 507
           ADLNTN  D+ GAFYGV+
Sbjct: 1   ADLNTNIHDETGAFYGVS 18



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 513 YESNENMTITCST 551
           YES+ENMTITCST
Sbjct: 21  YESSENMTITCST 33


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 273 EHGAGATSLRSHRRYGHIRGSFIRVSRRSAEKRQIP*EEGRSEGTVRERSEERLLPGQV- 449
           E GAG   LRS RR    +  F++V RRS +      ++    GT +  +     PG + 
Sbjct: 532 ELGAGPAVLRSRRRVDDGQWHFVKVFRRSQDGALQIDDDEIVNGTSKNGARSLNTPGPIF 591

Query: 450 LGG 458
           +GG
Sbjct: 592 IGG 594


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
 Frame = +1

Query: 238  RRASPGPDTYPPSTAPAQHLFV------HIGGTVTYAD-PLLESVDVQQKNDKFP 381
            +R SP   T PP  +P  HL        H  G V   D P+++ V V Q+  + P
Sbjct: 873  KRTSPASGTDPPLFSPGGHLIASLVELDHSYGLVKREDSPIIDIVSVNQEEPELP 927


>SB_4777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 262 YQDPGMLDEGGELYESQFVCGDGA 191
           Y+D G + + G +YE   VC DGA
Sbjct: 69  YEDDGAVYKDGSVYEDGAVCKDGA 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,003
Number of Sequences: 59808
Number of extensions: 225121
Number of successful extensions: 717
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)