Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0047
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4) 68 8e-12
SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1) 39 0.004
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25) 29 4.7
SB_8385| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43) 28 6.2
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 28 8.2
SB_10490| Best HMM Match : Toxin_27 (HMM E-Value=6.4) 28 8.2
>SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4)
Length = 157
Score = 67.7 bits (158), Expect = 8e-12
Identities = 30/63 (47%), Positives = 40/63 (63%)
Frame = +3
Query: 318 EDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQ 497
E A +E L+ + M DRK LK LQG+IW++GY GD GH+Y DVLP+LE+
Sbjct: 14 EIAQPAASVEQLIATLFAFMDEDRKSTALKALQGIIWREGYVNGDFTGHLYPDVLPSLEK 73
Query: 498 WRS 506
W+S
Sbjct: 74 WKS 76
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +2
Query: 506 SEGQKIYIYSSGSVQAQKLLFGQS 577
S+G +Y+YSSGSV AQKLLFG S
Sbjct: 76 SQGIDLYVYSSGSVAAQKLLFGYS 99
>SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)
Length = 810
Score = 38.7 bits (86), Expect = 0.004
Identities = 31/126 (24%), Positives = 52/126 (41%)
Frame = +3
Query: 237 QRSSERLRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQ 416
Q+ ++ + AIE K E + SKED+ + V+ + Q+ + ++ L L
Sbjct: 13 QQEKKKRQLEAIELARKLEEEKKKAVSDKESKEDK-DSFVEKLAMQVVKNLQLMELNSLS 71
Query: 417 GLIWKKGYDKGDIKGHVYDDVLPALEQWRSVRVRRFTSTPLDPSKPRNFFLASHLLGTYF 596
+ W G D G LP E+W ++ T SKP F H +G Y+
Sbjct: 72 -MYWNTGDDIGK---------LPTKEEWPTIAKEGIARTMKGFSKPEGFKYGKHCIGLYY 121
Query: 597 LSSMAI 614
+ S +
Sbjct: 122 MDSSIV 127
>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +3
Query: 297 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYD 443
G + PGED +K+D I+ L + ++ + S R++ +L+GL++ K D
Sbjct: 201 GHLAPPGEDKTKQDLIQNLGR-LRQRRRSIREIQNRDELEGLMYVKQGD 248
>SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 29.5 bits (63), Expect = 2.7
Identities = 31/129 (24%), Positives = 63/129 (48%)
Frame = +3
Query: 240 RSSERLRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQG 419
R +ERL + + + + ++ + +PG SK I V+ ++ Q D +A +++L
Sbjct: 263 RVAERLTQ--VNTESRLLQIMARLPGYMKSKWLAI---VQEIR-QAGRDPNIADVRKLVK 316
Query: 420 LIWKKGYDKGDIKGHVYDDVLPALEQWRSVRVRRFTSTPLDPSKPRNFFLASHLLGTYFL 599
+ K+ D + G + D+ ++ +S+ R + P+ P ++ + SHL G +
Sbjct: 317 AVAKEKNDP--VFGGLLDN--DDKDKKKSLGAHRTHNYKRHPAVPEDYQMTSHLFGGIWA 372
Query: 600 SSMAISTLL 626
S+A TLL
Sbjct: 373 PSVASYTLL 381
>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1347
Score = 28.7 bits (61), Expect = 4.7
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Frame = +3
Query: 288 SVEGLVTIPGEDASKEDQIEGLVKNVKWQMS-------SDRKVAPLKQLQGLIW----KK 434
+V + + G S+ Q+ G++K +W+ S S R L+Q +G I K
Sbjct: 738 NVYRIADVVGRRLSEVLQLTGVIKLTEWEFSEACHPYTSGRVGQHLEQNEGWITTPKLKD 797
Query: 435 GYDKGDIKGHVYDDVLPALEQWRSVRVRRFTSTPLDPSKPRNFFLASHLLG 587
D GD+ +VL ++ + S+R +++ DP P LA+ +G
Sbjct: 798 LLDSGDLVMATAREVLYSVGKKDSIRFPHSSASSEDPQYPEGRDLAARFVG 848
>SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)
Length = 357
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 130 IEGTTTSISFVKDKLFPYAE--ENVKDFLDAQWDDEDVKEAVNA*G 261
I G + V D L+ Y E ENV+D+L+A ++ KE ++ G
Sbjct: 214 IAGLGQAAQLVVDHLYEYQEHMENVRDYLEASLTEKFGKECIHING 259
>SB_8385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 372 QMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQWR---SVRVRRFT 527
+M+S R A + L GL++ G G ++ D P +QWR S+ RR T
Sbjct: 323 EMNSRRCRAGVSVLDGLVYAVGGFNGSLRVRTVDCYDPIKDQWRPAASMEARRST 377
>SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +3
Query: 231 GCQRSSERLRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLK 407
G +R + ++D +K E VT+ + E+ +E + KWQ + +PL+
Sbjct: 169 GGSSKRQRYNTITLKDSKKKEEFKVTLSNKFQVLEELLEEVTIEEKWQKVKEAVTSPLE 227
>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
Length = 453
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 113 LLFLTISPITVFSFAISTDPHQLCRNYF 30
L FL SP VFSF + P LC +F
Sbjct: 253 LFFLCWSPTVVFSFLVLFGPPGLCMKHF 280
>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1232
Score = 27.9 bits (59), Expect = 8.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 589 PTSSHRWPFRHCCRC 633
P HRW +RHC C
Sbjct: 301 PEQDHRWNWRHCTEC 315
>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 249 HCFFDILIIPLGI-KKIFHIFFSIRK*FVLNKADRCCSSFNIKKQNFAFLNNIADYSILF 73
HC ++ + G+ + +F+ S+R N+A+R C F + A ++ + +
Sbjct: 285 HCGTELGFVQHGVFRNVFNAAASVRYVIKFNEANRLCQVFGARLATIAQVDQAWKFGLFE 344
Query: 72 CHF 64
C +
Sbjct: 345 CRY 347
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 52 CGSVEMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDK 171
CG+ AK+ I D KS V +L+ E TTT +S KD+
Sbjct: 29 CGNASTAKK---IFDRDVKSYVFILEGESTTTKMSIPKDE 65
>SB_10490| Best HMM Match : Toxin_27 (HMM E-Value=6.4)
Length = 211
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 480 LPALEQWRSVRVRRFTSTPLDPSKPRNFFLASHLLGTYFLSSMAIST--LL*VLNRKLPV 653
L L Q R +R TS+ DP + FF+ L ++ +A T L L R +PV
Sbjct: 98 LAILSQRRKYLIRNKTSSVPDPQNDKVFFIRRFLASVIRINGIAFVTFCLASALRRGIPV 157
Query: 654 T 656
+
Sbjct: 158 S 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,100,755
Number of Sequences: 59808
Number of extensions: 467092
Number of successful extensions: 1278
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -