Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0039
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)                  29   4.9  
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         29   4.9  
SB_19153| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = -3

Query: 254 RSWVMQTSHMPPSELSGTLNCT-----LKQSFNMSPYTSSS 147
           RS + + SHMP S      NC+     +K+  ++SPYT  S
Sbjct: 590 RSTIRENSHMPGSLAFWMANCSELLHFIKEDIDISPYTKDS 630


>SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 528 SRKVQTQSRPRNVRAGRKNASSSHQERPS*GERKKYIKITPQDDERDAVNVKLR-RVTEI 704
           SRK   Q RPR   A +  AS   Q R    +    +    +D+     N  ++  +TE+
Sbjct: 380 SRKTVRQRRPRKTAAKKNKASQKEQVRNQIEDDTTDLTDNDEDESSKTKNYFIKGAITEL 439

Query: 705 QKL 713
           QK+
Sbjct: 440 QKV 442


>SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)
          Length = 394

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 552 RPRNVRAGRKNASSSHQERPS*GERKKYIKITPQDDERD 668
           RPR  R   K      QERP+ G RK   K T +D + D
Sbjct: 104 RPRKTREWTKKDQEEDQERPAGGPRKT-SKRTKRDQQED 141


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 508  QHVTYEEVEKFRRRVAQET*EPEEKMHHHHIKKGRAEEKEK 630
            +H+  EE E+ R+  A+   E EEK      ++ RAE++E+
Sbjct: 913  RHLREEEEERQRKEAAKGKKEEEEKKEKEAEERRRAEDEER 953


>SB_19153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 151 LRPSNGKWYSSPYTHLQRHNIDTYYRHCSP 62
           +R S+GKWY  P+T+ Q  +   +   C P
Sbjct: 142 IRHSSGKWYYLPFTNEQHSDELVFTDFCQP 171


>SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 470 IPDCHRLGDVLRLNWNLVEFWFR 402
           IPD +  GDV   +W   +FWF+
Sbjct: 236 IPDVYAAGDVCCASWEPSKFWFQ 258


>SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 171 VERLFQRTVECAGEL*RWHMRGLHNPAPNAINFKKQVLLTEEQFKKHVQKVFKTSIV 341
           VE++F+++VE   E   W +   H        +K+ V   E   KKH   +   S +
Sbjct: 332 VEKIFRKSVEFCNEHEVWKLNVAHVLFMQENKYKEAVGFYEPIVKKHYDNILSVSAI 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,257,062
Number of Sequences: 59808
Number of extensions: 374591
Number of successful extensions: 1066
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)