Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0038
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        31   0.36 
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       27   5.8  
SB_35446| Best HMM Match : Mucin (HMM E-Value=1.3)                     27   5.8  
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)              27   7.7  
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.7  

>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 335 LCQPEHVHVCDGSETXARALL 397
           LCQP+ +H+CDGS    ++L+
Sbjct: 169 LCQPDKIHICDGSPEENQSLV 189


>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 186  LREEDGTMCSSGDW---MXPRRPPNCLRGSTKPSPQLTTLTPKVRAFVERRLLCASR 347
            L  E G++CS G++      R  P+ L  S+ P PQ   +TP    FV  RL+ AS+
Sbjct: 928  LSYEIGSVCSRGEFYVRFDGRVSPHVL--SSAPLPQSVLVTPLSVQFVFTRLVLASK 982


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 329 AALCQPEHVHVCDGSETXARALLQL 403
           A L  P  +H+CDGS+   +A +++
Sbjct: 26  AKLMTPAQIHICDGSDAENKANIEV 50


>SB_35446| Best HMM Match : Mucin (HMM E-Value=1.3)
          Length = 241

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = +3

Query: 183 RLREEDGTMCSSGDWMXPRRPPNCLRGSTKPSPQLTTLTPKV--RAFVERRLLCASRSTC 356
           R  ++  T C SGD   P R       S   S  L T TP +  R F+       S+ T 
Sbjct: 122 RTADQGSTACRSGDSASPSRTVQISTVSNGVSRHLNTRTPPISARPFIAMSTTQQSKITK 181

Query: 357 TCATA 371
           T   A
Sbjct: 182 TITDA 186


>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
          Length = 1043

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 244 HQTACXGRRSLPHS*PLSLQR 306
           HQ+    RR LPHS P++ QR
Sbjct: 678 HQSGSPDRRQLPHSAPVTPQR 698


>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 156 HAAF*GHPRRLREEDGTMCSSGDWMXPRRPPNCLRGSTKPSPQL 287
           HAA    P   REE+G +        P RP +       P+PQL
Sbjct: 21  HAASSQEPAESREEEGFVMVDAATPPPTRPTHDDNNDCVPTPQL 64


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 174 HPRRLREEDGTMCSSGDWMXPRRPP 248
           H R L E+    CS GD +   RPP
Sbjct: 732 HTRELEEDGSYSCSPGDPLVLERPP 756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,182
Number of Sequences: 59808
Number of extensions: 184027
Number of successful extensions: 514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)