Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0035
(565 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15403| Best HMM Match : CH (HMM E-Value=0) 99 1e-21
SB_595| Best HMM Match : CH (HMM E-Value=0) 77 8e-15
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_40303| Best HMM Match : CH (HMM E-Value=5.1e-10) 35 0.053
SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.053
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.053
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0) 33 0.21
SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10) 31 0.65
SB_42524| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058) 29 2.0
SB_24838| Best HMM Match : NCD1 (HMM E-Value=2.3e-32) 29 2.6
SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0) 29 3.5
SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0) 29 3.5
SB_47648| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07) 28 4.6
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 28 6.1
SB_51310| Best HMM Match : NCD1 (HMM E-Value=2.3e-32) 28 6.1
SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_56589| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.1) 27 8.0
SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 99 bits (238), Expect = 1e-21
Identities = 52/91 (57%), Positives = 63/91 (69%)
Frame = +2
Query: 197 IHETRELDSGAGLLAGHRVYIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQITLEHCPG 376
IHE + L + L G +VNI A DLA+GK HLVLG+LWQ+IRIGLF++ITL + PG
Sbjct: 116 IHENQTLVINSALAIGCN--LVNIGAGDLAEGKKHLVLGVLWQVIRIGLFSKITLTNVPG 173
Query: 377 LTELLNDQERIEDLLALSPEAILLRWVNHQL 469
L LL + E IE L LSPE +LLRWVN L
Sbjct: 174 LARLLQEGETIEGLHHLSPEELLLRWVNFHL 204
Score = 74.5 bits (175), Expect = 5e-14
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = +3
Query: 84 SKQLYEKLKDGLILCKVINHPCPDTIDERAINKKNLTLYTKHENLTLALVSSQAIGC 254
S LYEK+KDG++LCK+IN P TIDER INK L ++T HEN TL + S+ AIGC
Sbjct: 76 SSDLYEKVKDGILLCKMINLSAPGTIDERVINKPPLKVFTIHENQTLVINSALAIGC 132
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 1 EQMAFSGWINSNLEHDPDLKHLLPIDPEASSS 96
EQ+AF+ WINS+L+ D + LPID SS
Sbjct: 46 EQVAFADWINSSLKEDESVHKYLPIDASEDSS 77
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 257 IVNIDAHDLAKGKPHLVLGLLWQIIR 334
++ I D+ +G +L LGL+WQ++R
Sbjct: 388 LIGIQGQDIHEGVQNLTLGLIWQMMR 413
>SB_595| Best HMM Match : CH (HMM E-Value=0)
Length = 905
Score = 77.4 bits (182), Expect = 8e-15
Identities = 34/61 (55%), Positives = 46/61 (75%)
Frame = +2
Query: 329 IRIGLFNQITLEHCPGLTELLNDQERIEDLLALSPEAILLRWVNHQLQSAGVTRRCANFQ 508
+RIGLF +IT+++CPGL +LL+D E ++DL L+PE ILLRW N QL+ AG RR NF
Sbjct: 520 LRIGLFAKITIQNCPGLVQLLHDHEELDDLRRLAPEDILLRWFNFQLEDAGHHRRVNNFS 579
Query: 509 T 511
+
Sbjct: 580 S 580
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 484 HAALRQLPDDVADSEIYSYLLKQIAP 561
H + D++D+E YS LL +IAP
Sbjct: 572 HRRVNNFSSDISDAENYSVLLNKIAP 597
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/94 (30%), Positives = 49/94 (52%)
Frame = +2
Query: 251 VYIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQITLEHCPGLTELLNDQERIEDLLALS 430
+ +VNIDA D+ KG L+LGL+W +I L QI++ + L+D + ++ ++
Sbjct: 447 IRLVNIDASDIVKGNLKLILGLIWTLI---LKYQISMPY-------LDDDD--DENHKMT 494
Query: 431 PEAILLRWVNHQLQSAGVTRRCANFQTTWPTPRS 532
P+ LL WV ++ + NF T W R+
Sbjct: 495 PKQALLAWVKSKMPE---SVPMDNFTTHWNDGRA 525
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 200 HETRELDSGAGLLAGHRVYIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQITLE 364
H + + + L ++ +VNI + D+ G P L LGL+W II N + +E
Sbjct: 93 HMLQNVQTALEFLESKKIKLVNIRSDDIVDGNPKLTLGLIWTIILYFQINDLDVE 147
>SB_40303| Best HMM Match : CH (HMM E-Value=5.1e-10)
Length = 82
Score = 34.7 bits (76), Expect = 0.053
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 233 LLAGHR-VYIVNIDAHDLAKGKPHLVLGLLWQII 331
+L+G + V++ N+ AHD+ G + LGL+W II
Sbjct: 45 VLSGEKLVHLENVGAHDIVDGNQKITLGLIWTII 78
>SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 34.7 bits (76), Expect = 0.053
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 233 LLAGHR-VYIVNIDAHDLAKGKPHLVLGLLWQII 331
+L+G + V++ N+ AHD+ G + LGL+W II
Sbjct: 81 VLSGEKLVHLENVGAHDIVDGNQKITLGLIWTII 114
>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 34.7 bits (76), Expect = 0.053
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 158 DRRASDQQEEPDVIHETRELDSGA-GLLAGHRVYIVNIDAHDLAKGKPHLVLGLLWQII 331
+++ + + P + + E + A LL + +VNID D+ G L++GL+W++I
Sbjct: 83 EKKCKNCKMNPKFVQDKLENTTQALKLLENDGIQLVNIDNQDIVNGNLKLIMGLIWRLI 141
>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1457
Score = 32.7 bits (71), Expect = 0.21
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +2
Query: 197 IHETRELDSGAGLLAGHRVYIVNIDAHDLAKGKPHLVLGLLWQII 331
+H +++ +L + + ++NI +D+ G + LGL+W +I
Sbjct: 82 LHHLNNVNNAMMILEENDIRLINISNNDIVDGNHKMTLGLIWSVI 126
>SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)
Length = 718
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 36 LRTRSRPQTSLADRSRSKQLYEKLKDGLILCKVINHPCPDTIDERAINK 182
L+ R+ P D K + E D + KVINH P+TID A+ +
Sbjct: 178 LKRRTSPSVYGGDIEALKLVIEWQSDKRLRFKVINHRDPETIDRMAVRQ 226
>SB_42524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 56 SNISCRSIPKQAALRKTQRRTYSMQSNKSPVPGHDRRASDQQEEPDVIHETRE 214
++I C+ IP+QA + R Y NK P+PG+ R + QE P+ R+
Sbjct: 175 TSIPCQEIPEQA----SNARKY---PNKHPMPGNTRTSISCQEIPEPASHARK 220
>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
Length = 1187
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 233 LLAGHRVYIVNIDAHDLAKGKPHLVLGLLWQII 331
LL V +V I+ D+A GK +LGL+W II
Sbjct: 68 LLNTKLVKMVGINNTDIADGKVMTILGLVWSII 100
>SB_24838| Best HMM Match : NCD1 (HMM E-Value=2.3e-32)
Length = 539
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 83 KQAALRKTQRRTYSMQSNKSPVPGHDRRASDQQEEPDVIHETRELDSGAGLLAGHRVYIV 262
+Q LRK QRR+ SNK G D D QE D HE++ DS G++ G
Sbjct: 365 EQKELRKKQRRSERYYSNKE---GKD----DPQEMDDSRHESQ--DSSDGVMEGMITSEG 415
Query: 263 NIDAHDLAKG 292
++ +D +G
Sbjct: 416 VVEGYDYCEG 425
>SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 548
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -1
Query: 490 PRDAGGLQLVVDPAQQDGLRGQSQQ-ILDAFLVIQQFRESGAVLQRYLVEETNSDDLPQE 314
P + G++ + + LR + Q ILD F + Q E ++ L E +SD+ +
Sbjct: 150 PSNCLGIETAANQFDCEALRKTANQYILDNFATVSQTDEFKSLPADKLEEFLSSDETKVD 209
Query: 313 TEHQMRFAFSKIVSVDVDDVHPM 245
E Q+ A VS + D+ P+
Sbjct: 210 REEQIFEALETWVSHNEDERKPL 232
>SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 570
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -1
Query: 490 PRDAGGLQLVVDPAQQDGLRGQSQQ-ILDAFLVIQQFRESGAVLQRYLVEETNSDDLPQE 314
P + G++ + + LR + Q ILD F + Q E ++ L E +SD+ +
Sbjct: 150 PSNCLGIETAANQFDCEALRKTANQYILDNFATVSQTDEFKSLPADKLEEFLSSDETKVD 209
Query: 313 TEHQMRFAFSKIVSVDVDDVHPM 245
E Q+ A VS + D+ P+
Sbjct: 210 REEQIFEALETWVSHNEDERKPL 232
>SB_47648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 251 VYIVNIDAHDLAKGKPHLVLGLLWQII 331
+ ++NI +D+ G + LGL+W +I
Sbjct: 1 IRLINISNNDIVDGNHKMTLGLIWSVI 27
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +2
Query: 269 DAHDLAKGKPHLVLGLLWQIIRIGLFNQITLEHCPGLTELLNDQERIEDLLALSPEAILL 448
+ +DL+ G L+ L + + ++ +L +C G + L A +LL
Sbjct: 2299 NGNDLSSGVFRLLYAKLPIAMLLFIYGVNSLYYCYGTNKATLSSRLCIYLRANVSNRVLL 2358
Query: 449 RWVNHQLQS-AGVTRRCANFQTTWPTPRSTPTC*SRSRP 562
R++NH+++ +G + R + TT TP S + P
Sbjct: 2359 RYINHKVKRWSGYSTRDISAITTLTASSPTPIYTSTTHP 2397
>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
Length = 1844
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 355 NAGALPR--THGIAE*PGTHRGSVGSVPGGHPAALGQPP 465
N G+ PR T+ PG GS GS PG LG+ P
Sbjct: 461 NPGSKPRNCTNSPGSKPGNRTGSSGSRPGNGSGPLGKRP 499
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 373 RTHGIAE*PGTHRGSVGSVPGGHPAALGQPPA 468
R G P HR + S+P H GQPPA
Sbjct: 562 RPDGAVARPQPHRSAEPSIPTPHTMQQGQPPA 593
>SB_51310| Best HMM Match : NCD1 (HMM E-Value=2.3e-32)
Length = 423
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +2
Query: 83 KQAALRKTQRRTYSMQSNKSPVPGHDRRASDQQEEPDVIHETRELDSGAGLLAG 244
+Q LRK QRR+ SNK G D D QE D HE++ DS G++ G
Sbjct: 365 EQKELRKKQRRSERYYSNKE---GKD----DPQEMDDSRHESQ--DSSDGVMEG 409
>SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1057
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 446 LRWVNHQLQSAGVTRRCANFQTTWPTPR 529
L ++ +L++AG+T NFQT+ T R
Sbjct: 794 LNYIQSKLETAGLTTHLQNFQTSHTTTR 821
>SB_56589| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.1)
Length = 743
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = +1
Query: 418 VGSVPGGHPAALGQPPAAVRRRHAALRQLPDDVADSEIY 534
+ SVP LG PP H R + D+ +Y
Sbjct: 599 LNSVPSSTMRTLGHPPTGCELTHLRTRSMEDEATSGVVY 637
>SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 851
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -2
Query: 318 RRPSTR*GLPLARS*ASMLTMYTRWPARRPAPESSSRVSCITSGSSC*SLARLSCPGTGD 139
R PST LPL + ++W +RP P+S++++ + + C L G GD
Sbjct: 524 RCPSTV--LPLKSRPQLLWQKGSQWSEKRPVPQSTTKLIYLVQTAVCIPPRLLESGGFGD 581
Query: 138 LLLC 127
C
Sbjct: 582 AHSC 585
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578,264
Number of Sequences: 59808
Number of extensions: 368078
Number of successful extensions: 1289
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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