Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0127
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_16320| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05) 30 1.5
SB_40708| Best HMM Match : SRCR (HMM E-Value=0) 30 1.5
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_30386| Best HMM Match : zf-CCHC (HMM E-Value=0.0024) 30 1.5
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42) 29 1.9
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) 29 2.6
SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3) 29 2.6
SB_20969| Best HMM Match : DUF164 (HMM E-Value=0.6) 29 2.6
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 28 4.5
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_51937| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 28 5.9
SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39) 28 5.9
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 28 5.9
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 28 5.9
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 28 5.9
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 5.9
SB_12482| Best HMM Match : TP2 (HMM E-Value=5.6) 28 5.9
SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_155| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 28 5.9
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05) 28 5.9
SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21) 28 5.9
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 28 5.9
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 5.9
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 28 5.9
SB_23057| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 28 5.9
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05) 28 5.9
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 28 5.9
SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 27 7.9
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 264 QSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCAD 386
+SP C RC GH + CT+ +C CG H+R C +
Sbjct: 117 ESPGESCYRCGKSGHFARDCTDDT-KCYKCGNTGHIRRDCPE 157
>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1577
Score = 31.9 bits (69), Expect = 0.37
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +3
Query: 204 QRMTEAGALYLDL--QRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREK 377
QR T AL+++ Q R + +C RCL H C C C G H
Sbjct: 330 QRQTSGSALFVEANGQGERKKILVKYARCFRCLRKNHRSYECKSKDSNCKGCAGAHHLSI 389
Query: 378 CADFIAG 398
C + +G
Sbjct: 390 CENQASG 396
>SB_16320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 57 EIIKALHIQNEDIFRDLSQEDKETTIKFKKRTKNPKTAHVIVQVG 191
+I++ LHI NE RDL + E +K + T NPKT + +VG
Sbjct: 96 KILRLLHI-NE--LRDLQTKINEAIVKVQALTANPKTDQSLGKVG 137
>SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05)
Length = 659
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = -3
Query: 325 VQNFRPCPNARHLVHWMSGDWSSTLILCRSR*RAPASVILCHTTGPTWTMTCA 167
V N R C N H+ SS C P+S L TTGPTW CA
Sbjct: 190 VYNKRLCRNCLKEGHFADSCPSSGR--CLKEGYGPSSCTLGRTTGPTWRAYCA 240
>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1976
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 285 TRCLAFGHGRKFCTESVDRCSHCGGPHLR--EKC-ADFIAGTEP 407
T+CL C ES +C+ C P+ R KC AD AG +P
Sbjct: 585 TKCLKCDSNCAICEESSTKCTSCQPPNFRLGNKCQADCGAGYKP 628
>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1322
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 276 IQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 380
++C C GH R C RC CGG H + C
Sbjct: 526 LRCFNCSESGHTRAACYMD-QRCMLCGGSHEVDDC 559
>SB_30386| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
Length = 90
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 276 IQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 380
++C C GH R C RC CGG H + C
Sbjct: 18 LRCFNCSESGHTRAACYMD-QRCMLCGGSHEVDDC 51
>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
Length = 832
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 282 CTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 380
C CL+ H CT RC CGG H C
Sbjct: 103 CYNCLSSSHISSKCTSKF-RCRQCGGKHHTTIC 134
>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 853
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 24 PKDVFLPSDD---EEIIKALHIQNEDIFRDLSQEDKETTIKFKKRTKNPKTAHV 176
PK F DD EE+ + L+ +N + +DKET F +++ K+ H+
Sbjct: 568 PKTKFYDDDDCDYEEVEEVLYCKNNVCVHPSTGKDKETAGYFTIKSRTRKSGHI 621
>SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)
Length = 374
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 342 CSHCGGPHLREKCADFIAGTEPQC--CNCSHSGLRKADHNAFSAECP 476
C C G H R+ C + T P+C CN +H L D +A + P
Sbjct: 148 CFKCTGKHFRKDCEE----TPPRCEACNKNHLTLLHEDRSAPAKAAP 190
>SB_20969| Best HMM Match : DUF164 (HMM E-Value=0.6)
Length = 478
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 264 QSPLIQCTRC--LAFGHGRKFCTE-SVDRCSHCGGPHLREKCADFIAGTEPQCCNC 422
QS L +C+RC L+ G G T+ S+ RCS C + I G+ +C C
Sbjct: 410 QSSLARCSRCLLLSIGSGGMVLTQSSLARCSRCLLLSIGSGGMLLIQGSLARCSRC 465
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 264 QSPLIQCTRC--LAFGHGRKFCTE-SVDRCSHC 353
QS L +C+RC L+ G G T+ S+ RCS C
Sbjct: 387 QSSLARCSRCLLLSIGSGSMVLTQSSLARCSRC 419
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 264 QSPLIQCTRC--LAFGHGRKFCTE-SVDRCSHC 353
QS L +C+RC L+ G G T+ S+ RCS C
Sbjct: 341 QSSLARCSRCLVLSLGSGGMVLTQSSLARCSRC 373
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 264 QSPLIQCTRC--LAFGHGRKFCTE-SVDRCSHC 353
QS L +C+RC L+ G G T+ S+ RCS C
Sbjct: 364 QSSLARCSRCLVLSIGSGGMVLTQSSLARCSRC 396
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 264 QSPLIQCTRC--LAFGHGRKFCTE-SVDRCSHC 353
QS L C+RC L+ G G T+ S+ RCS C
Sbjct: 318 QSSLAHCSRCLVLSLGSGGMVLTQSSLARCSRC 350
>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1257
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 303 GHGRKFCTESVDRCSHCGGPH-LREKCAD 386
GH +K C S + CG P+ L+EKC +
Sbjct: 42 GHCKKTCNTSCTTSNDCGSPNSLQEKCCN 70
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 227 PLPGPAKDQSRGPVSAHPMHE 289
PL GPA+ S P++A P+HE
Sbjct: 1200 PLEGPAQPASVPPIAAPPLHE 1220
>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1604
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 153 KNPKTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQSP 272
+ P ++ + ++ + TE G YLDL+ E+QSP
Sbjct: 1397 QRPTFTQLLETIDKILEGKTTETGEEYLDLENDTTEEQSP 1436
>SB_51937| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 151
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 105 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 142
>SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)
Length = 1311
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 105 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 142
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 207 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 244
>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
Length = 856
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 350 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 387
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 876 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 913
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 342 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 379
>SB_12482| Best HMM Match : TP2 (HMM E-Value=5.6)
Length = 406
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1
Query: 103 TCLRKIKKRPLSSRRGQKIPKRRTSLSRLVPWYGKG*RRLGPSTW---TCKGSESRTSL 270
TC KI +R +S R +I R+T ++ R GPS W TC+ ++++++L
Sbjct: 19 TCQEKIARRESTSTRTNRILSRKTCQVKIA-------RVDGPSGWMSCTCRATDAKSTL 70
>SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 422 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKMGHLKRVC 459
>SB_155| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 296
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 207 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 244
>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 403
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 207 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 244
>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
Length = 1332
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 405 PQCCNCSHSGLRKADHNAFSAECP 476
P C C H G N FS CP
Sbjct: 390 PDCARCDHGGTCVDKVNGFSCRCP 413
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 223 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 260
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 493 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 530
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 546 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 583
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 185 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 222
>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 342
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 180 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 217
>SB_23057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 30 DVFLPSDDEEIIKALHIQ-NEDIFRDLSQEDKETTIKFKKRTKNPKTAHV 176
DVFL SDDE+ ++ ++ E++ R+LS+E E+ ++T +P++ +
Sbjct: 64 DVFLGSDDEQQNESQNVPLGENLTRNLSEEPDES----GRQTASPESTEI 109
>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 369
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 207 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 244
>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
Length = 415
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 44 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 81
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 270 PLIQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKC 380
P C RC + H K C +C +CG HL+ C
Sbjct: 246 PKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHLKRVC 283
>SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 66 KALHIQNEDIFRDLSQEDKETTIKFKKRTKNPKTAHVIV 182
KALH + E+ R + E E I + + P+ AH ++
Sbjct: 76 KALHYKEEEFHRVPNTETLEALISINNKLQQPEAAHGVL 114
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 542 CPAFRLCICCVSAS--QVIPLFWYRAFGAKSVM 450
C F ICCVSAS + P+F Y + K M
Sbjct: 962 CDRFVSTICCVSASGTSMPPMFIYHSVDGKQAM 994
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,296,708
Number of Sequences: 59808
Number of extensions: 495786
Number of successful extensions: 1516
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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