Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0048
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 31 0.64
SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47) 30 1.5
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023) 29 3.4
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 29 3.4
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34) 29 4.5
SB_59190| Best HMM Match : rve (HMM E-Value=6e-18) 28 6.0
SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_51018| Best HMM Match : RVT_1 (HMM E-Value=5.8e-17) 28 6.0
SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066) 28 6.0
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 28 6.0
SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 28 6.0
SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39) 28 6.0
SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22) 28 6.0
SB_47235| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 28 6.0
SB_42289| Best HMM Match : RVT_1 (HMM E-Value=5.2e-17) 28 6.0
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 28 6.0
SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22) 28 6.0
SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 28 6.0
SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18) 28 6.0
SB_8937| Best HMM Match : RVP (HMM E-Value=0.029) 28 6.0
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 28 7.9
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 28 7.9
>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 44.8 bits (101), Expect = 6e-05
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +2
Query: 266 MIPHKTERGKNALRRLRTYDGCPPPFD 346
MIPHKT++G A+ R++ +DG PPP+D
Sbjct: 1 MIPHKTKKGTEAMNRMKVFDGVPPPYD 27
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 31.5 bits (68), Expect = 0.64
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 34 SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSISLA 144
SM+V +C ++W + P F +L+W+ + S+S++
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWYNTHPSVSVS 301
>SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47)
Length = 624
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 398 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNLRGSP 541
PG+ C VG+L + W + + R L + A R P + +P
Sbjct: 535 PGKQLCLVGQLGYRGRWSFSVIDRPLHTRELAAAFTRTPAAKQRANNP 582
>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
Length = 1640
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 398 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLP 514
PG C VG+L H W + R L + A R P
Sbjct: 1403 PGEQLCLVGQLGHRARWSSSVIDRPLHTRELAAAFTRTP 1441
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 398 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLP 514
PG C VG+L H W + R L + A R P
Sbjct: 1234 PGEQLCLVGQLDHRARWSSSVIDRPLHTRELAAAFTRTP 1272
>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
Length = 225
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -3
Query: 211 RAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTL 101
R G+ + + ++ ++ LFL PE++ R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167
>SB_59190| Best HMM Match : rve (HMM E-Value=6e-18)
Length = 660
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 255 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 291
>SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 938
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 155 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 191
>SB_51018| Best HMM Match : RVT_1 (HMM E-Value=5.8e-17)
Length = 635
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 203 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 239
>SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
Length = 557
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 476 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 512
>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 1432
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 371 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 407
>SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 609
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 393 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 429
>SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)
Length = 1037
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 398 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLP 514
PG C VG+L H W + R L + A R P
Sbjct: 848 PGEQLCLVGQLDHRARWSSSVIDRPLHTRELAAAFIRTP 886
>SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 800
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 203 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 239
>SB_47235| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 378
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 24 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 60
>SB_42289| Best HMM Match : RVT_1 (HMM E-Value=5.2e-17)
Length = 429
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 109 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 145
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Frame = +2
Query: 470 KLEDKRKG----------KAVKRLPMKRNLRGSPRMLVRRCRKRQHHSLPSSNPMDTIRT 619
KLEDKRK K ++ +KR+L+ SP+ R K + P ++P +++T
Sbjct: 92 KLEDKRKTSRKTSLNASRKTSRKTSLKRSLKTSPKTSRRTSLKTSQKTSPKTSPKTSLKT 151
>SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 875
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 24 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 60
>SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 649
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 427 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 463
>SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)
Length = 1003
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 239 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 275
>SB_8937| Best HMM Match : RVP (HMM E-Value=0.029)
Length = 303
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 DKRKGKAVKRLPMKRNLR--GSPRMLVRRCRKRQHHSL 586
DKRKGK K P K N+R PR L R KR H+ +
Sbjct: 255 DKRKGKEKKSPPTKDNIRICIDPRDL-NRALKRPHYPM 291
>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Frame = +3
Query: 30 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKL 164
+IDGR + GRLA I ++L G+ VVV+ + I +SG + NKL
Sbjct: 20 LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKL 76
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 422 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 315
+H S + +V ++H+E +A H Y R + H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 413 CHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNLRGSPRML 550
CH+ +L E + R+ RK E+KR+ A KR +RNL+ R+L
Sbjct: 397 CHMQKLETEE--ENRE--RKREEKRRRGAEKRAKRRRNLQTGSRIL 438
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,733,402
Number of Sequences: 59808
Number of extensions: 465886
Number of successful extensions: 1916
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1912
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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