Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0046
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.031
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.29 
SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)                   28   4.7  
SB_32949| Best HMM Match : SAP (HMM E-Value=1)                         28   4.7  
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)              28   6.2  

>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 256 LNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIWACVPMLCS 417
           L +E++Y   LG+P++M+ +      NLA  +      SH   L W  VPM CS
Sbjct: 118 LMQEVNYAIHLGLPSVMLELGNYNIINLAHYVNDILINSHVQQL-WIKVPMRCS 170


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 398 VYLCYVVEHIXNALKMMKKRKLGMSPGTGGP-NSMSALIGINVLVLFWSCSADL 556
           V LCY++ ++ N + ++KK K     GTG P    S    ++ LV F   ++++
Sbjct: 414 VSLCYILSNLGNVVSLIKKGKTNCRAGTGIPLQRKSQTSSVSPLVQFEGVTSEM 467


>SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)
          Length = 407

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 315 TREREQQFSQNSPNLL*NEPPSVSNMGMCTYAM 413
           T+  +QQ S  SP+ +   PPS S  G  T AM
Sbjct: 114 TKSVKQQSSMFSPSAMLCSPPSTSTQGQTTLAM 146


>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
          Length = 269

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 315 TREREQQFSQNSPNLL*NEPPSVSNMGMCTYAM 413
           T+  +QQ S  SP+ +   PPS S  G  T AM
Sbjct: 192 TKSVKQQSSMFSPSAMLCSPPSTSTQGQTTLAM 224


>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
          Length = 498

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 463 WNEPWYWWSKFHERLDWDKRV 525
           WN+PWY W K  +  D DK V
Sbjct: 26  WNKPWYQWDK--KENDADKTV 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,411,692
Number of Sequences: 59808
Number of extensions: 365994
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)