Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0067
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25794| Best HMM Match : rve (HMM E-Value=6.6e-17)                   32   0.47 
SB_55609| Best HMM Match : ig (HMM E-Value=0.022)                      30   1.4  
SB_1299| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)                 29   4.3  
SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_47903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_25794| Best HMM Match : rve (HMM E-Value=6.6e-17)
          Length = 267

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 473 YINGHEMEDTRGKATLKKNSSRFDFVGVPPTM 568
           +I  + +EDTR  AT+KK  S F   G+P T+
Sbjct: 51  FIKINHLEDTRTPATIKKIKSHFSRYGIPDTV 82


>SB_55609| Best HMM Match : ig (HMM E-Value=0.022)
          Length = 200

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 254 LKLGGLSEEASGLYRCDIERDAPPHLFESRKAYMQVHGHE 373
           L+L  L+ EA+G YRCD+    P    E    ++QV+G E
Sbjct: 142 LRLEKLTVEAAGAYRCDVVSGRPR---ERCSVHLQVNGRE 178


>SB_1299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 523 FQGRFAPCVFHFMSVYVPTYFGVGSGTTIGLYQFP 419
           F GRF+  +F F+  +    F    G  + L++FP
Sbjct: 258 FPGRFSAALFEFLGGFSAALFEFSGGFFVALFEFP 292


>SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)
          Length = 611

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 211 HSEYWKRSCTRRGARFVPEELSGAFEPVEDRE 116
           H E+ K    RRG + + E+L G  E ++ RE
Sbjct: 168 HKEHEKEEARRRGEKVIAEQLRGQMEELKLRE 199


>SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1014

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = -2

Query: 241 RSTGYQLDPSHSEYWKRSCTRRGA--RFVPEELSGAFE---PVEDR-EVGVVAALDVHFV 80
           R TGYQL    +EYW      R A  ++V + +    E   PV++     VVA L++ F 
Sbjct: 708 RETGYQLATQTAEYWASRANYRDAADQYVIQYVMPPDEYQFPVDNSVYTNVVAKLNLEFA 767

Query: 79  LSRPHYLGDH 50
           +     LG +
Sbjct: 768 IQISKILGKY 777


>SB_47903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 68  WPGQDEVDI---ECRYDANFTILNWFKGSTEFFRYKPGAAPSTRSFPILGVGR 217
           W G D++++   + R      +++W  G+T+F  Y   +  + RS  +LG+GR
Sbjct: 5   WLGLDKINLLTHQTRNKLRVDMMDWH-GNTKFAEYSYFSVAAERSKYVLGLGR 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,247,490
Number of Sequences: 59808
Number of extensions: 463338
Number of successful extensions: 1247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)