Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0004
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)             82   4e-16
SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                   71   7e-13
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)                 29   3.8  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)             29   3.8  
SB_54101| Best HMM Match : MORN (HMM E-Value=2.8e-11)                  28   5.0  
SB_52915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_28791| Best HMM Match : DUF1656 (HMM E-Value=0.59)                  28   6.6  
SB_3703| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)                       27   8.7  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          27   8.7  

>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
          Length = 133

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 41/71 (57%), Positives = 53/71 (74%)
 Frame = +1

Query: 40  MQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKDAL 219
           +QEFMI P GA +F +A   G+ VYH LKK++K+K GL +T +GDEGGFAPN+ +N  AL
Sbjct: 16  IQEFMIAPIGAESFKQAYEWGAAVYHSLKKVLKDK-GL-ATGLGDEGGFAPNLPSNAAAL 73

Query: 220 YLIQDAIQKAG 252
            LI DAI+ AG
Sbjct: 74  DLILDAIKAAG 84



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +3

Query: 264 IDIGMDVAASEFFKDGKYDLD 326
           + + +DVAASEFF+DGKY  +
Sbjct: 91  VALALDVAASEFFEDGKYTFE 111


>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 29/41 (70%), Positives = 37/41 (90%)
 Frame = +1

Query: 34  LAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLD 156
           LAMQEFM+ PTGAS F EAMRMG+E+Y +LKK++KEK+G+D
Sbjct: 61  LAMQEFMLLPTGASNFREAMRMGAEIYQNLKKVVKEKYGID 101



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = +3

Query: 414 MVSIEDPFDQDDWSAWANLTGRTPIQIVG 500
           +VSIED FDQD W AW+ LTG   IQIVG
Sbjct: 129 VVSIEDAFDQDHWDAWSKLTGNVDIQIVG 157



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +2

Query: 530 IATAVEKKACNCLLLKVNQIGS 595
           I TA+EKKACNCLLLKVNQIGS
Sbjct: 158 IQTAIEKKACNCLLLKVNQIGS 179


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 526 LRVCHRRSSPTI*IGVRPVRLAHADQSSWSKGSSMDTMGKSL 401
           LR   R S P I I   P+   HA QS W++ ++     +SL
Sbjct: 212 LRGQRRASVPNIKIHTAPINPGHARQSQWARPANSSFPSRSL 253


>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
          Length = 892

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 242 WIAS*IR*RASLLFCMFGAKPPSSPTAVESNPNFSLMIFFK 120
           W +  ++ R  LL C F   P +SP+A+E   N  L +F K
Sbjct: 40  WASVKLKGRKELLLCSFYRVPNNSPSALEVLSNAILDVFNK 80


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 242 WIAS*IR*RASLLFCMFGAKPPSSPTAVESNPNFSLMIFFK 120
           W +  ++ R  LL C F   P +SP+A+E   N  L +F K
Sbjct: 292 WASVKLKGRKELLLCSFYRVPNNSPSALEVLSNAILDVFNK 332


>SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)
          Length = 708

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 243 ESWLAGKIDIGMDVAASEFFKDGKYDLDFKNPD-SNPGDYLSSDKLADVYLDFIKDFPMV 419
           + WL   +++  D    E  + G+   DF + D ++   + S D+L D Y     +   +
Sbjct: 10  DEWLTQLLEVLPDPEEEEEEESGRLPPDFFHDDLADLPQFSSFDELFDYYCTPEGEGEEI 69

Query: 420 SIEDPFDQDDWSAWANLTGR 479
           S EDPF  +   +     GR
Sbjct: 70  SFEDPFMNEPGPSGLQQQGR 89


>SB_54101| Best HMM Match : MORN (HMM E-Value=2.8e-11)
          Length = 99

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -3

Query: 453 TNHPGQKDPQWTPWENL**SPNRHQLIYLMTGSRL--DWN 340
           T HP  ++P W  W+        H  +Y + G +   +WN
Sbjct: 4   TKHPKTREPLWKEWDYKAQKKGVHHTVYSVNGDQYTGEWN 43


>SB_52915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -3

Query: 453 TNHPGQKDPQWTPWENL**SPNRHQLIYLMTGSRL--DWN 340
           T HP  ++P W  W+        H  +Y + G +   +WN
Sbjct: 4   TKHPKTREPLWKEWDYKAQKKGVHHTVYSVNGDQYTGEWN 43


>SB_28791| Best HMM Match : DUF1656 (HMM E-Value=0.59)
          Length = 199

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 234 ILNQIKSILVVLYVWSETTFITNSRRV 154
           +  ++K  LVV+Y +SET F  N+ R+
Sbjct: 151 VFGRLKDFLVVVYRYSETAFYDNTDRL 177


>SB_3703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 930

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 69  PCRENHEFLHGKXYFQXVISCRI 1
           P R  H+F HG  YF    SC+I
Sbjct: 313 PARVVHDFNHGLRYFMTQTSCKI 335


>SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)
          Length = 195

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 249 WLAGKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDY 359
           WL+G ID+G  +   +F +     + +K PD  P +Y
Sbjct: 143 WLSG-IDVGTQMVNQQFQEPFVAIVGYKPPDEGPSEY 178


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 291 SEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDF 410
           S+F        DF +  S P D+L+S  L   +L    DF
Sbjct: 665 SDFLTSSSSPSDFLSSSSLPSDFLTSSSLLSDFLSLPSDF 704



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 291  SEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDF 410
            S+F        DF +  S P D+L+S  L   +L    DF
Sbjct: 1260 SDFLTSSSSPSDFLSSSSLPSDFLTSSSLLSDFLSLPSDF 1299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,981,452
Number of Sequences: 59808
Number of extensions: 414362
Number of successful extensions: 916
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)