Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d23
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       31   0.62 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  

>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = +3

Query: 309  VILSALEVLGYKVVASSSTAVKQDYNEYMWTMRKEFSEPEPSIIVEQDNITNFSKEAMHL 488
            V +S  E+L +K    S    K+++ + + ++ ++ SE E  + V   + T  + E  HL
Sbjct: 1174 VSISEGELLKFKNTLQSE---KEEFEKKLSSLLEQLSEMESEVSVLNKSCTEKTGEVEHL 1230

Query: 489  SNYHSNKDDEV 521
                SN+D+E+
Sbjct: 1231 KRQLSNRDEEL 1241


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
 Frame = +3

Query: 324 LEVLGYKVVASSSTAVKQDYNEY----MWTMRKEFSEPEPSIIVEQDNITNFSKEA---- 479
           +EV+G++ + ++   + Q  +E     M +MRK +++ + S +   D + N  KE     
Sbjct: 264 VEVIGWRDLPAAGEQLIQVESENKANEMVSMRKAYAQQQKSQLTVDDVMANIFKEGEGHQ 323

Query: 480 --MHLSNYHSNKDDEV*TLLYFKIKLD*GINNMESKGSQNVLSNLLNAPIAPITEDGV 647
             + L  Y +++  +V         ++  ++ +++  S  +  ++LNA + P+TE  V
Sbjct: 324 SRVPLKGYDASEKLDVVIRADVHGSVEAIVDALKTYKSDKIKMSILNAGVGPVTESDV 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,071,049
Number of Sequences: 59808
Number of extensions: 313378
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)