Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d16
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   2.7  
SB_46952| Best HMM Match : Gemini_AL2 (HMM E-Value=1.3)                28   3.6  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     28   3.6  
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  
SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)                   27   6.3  

>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   GTRAAQRDCARVPACNATAP 60
           G R  QR   RVP CN TAP
Sbjct: 131 GIRRTQRISPRVPTCNGTAP 150


>SB_46952| Best HMM Match : Gemini_AL2 (HMM E-Value=1.3)
          Length = 258

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 97  PAASSDVARPLDWPRY*RDSPRRLATRQTRISIMG 201
           PA+  DV  P   PRY RD  RR + +  RIS+ G
Sbjct: 19  PASLPDVD-PSRLPRYLRDPTRRSSLQPRRISVQG 52


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 70  WGRVGPVRRPAASSDVARPLDWPR 141
           WG V P  RP   SDV   +DW R
Sbjct: 504 WGWVCPQARPKVFSDVLAAMDWIR 527


>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 70  WGRVGPVRRPAASSDVARPLDWPR 141
           WG V P  RP   SDV   +DW R
Sbjct: 753 WGWVCPQARPKVFSDVLAAMDWIR 776


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 73   GRVGPVRRPAASSDVARPLDWPRY*RDSPRRLATRQTRISIMGDFILN 216
            GR  PV+ P   S   RP +  +Y  ++PR+   +Q +  I    + N
Sbjct: 3186 GRSTPVQTPRRGSQDNRPAENSQYTENTPRKDEGQQKKEEIKASIVTN 3233


>SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -3

Query: 186 ARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYP 31
           ARL    S+R   S+ R     + V     P  R  ATP+T   G + R  P
Sbjct: 35  ARLPATPSTRSYDSLQRRAPEGTTVCNAEHPKARQPATPSTRRHGSLQRRAP 86


>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
          Length = 649

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 246 VNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPS 118
           +NS   + S+   K   +G  + S ++ +RR+  +  PV R S
Sbjct: 234 INSQSKSKSKAVQKAKGHGKLKKSSKQGTRRINKLGDPVNRTS 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,580
Number of Sequences: 59808
Number of extensions: 291581
Number of successful extensions: 681
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)