Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c18
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                141   5e-34
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)         77   1e-14
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)               76   2e-14
SB_40562| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   1e-05
SB_12974| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)                   30   2.0  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         29   3.4  
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)                   29   3.4  
SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0)                       28   6.0  
SB_43773| Best HMM Match : TPR_1 (HMM E-Value=0.26)                    28   7.9  

>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score =  141 bits (341), Expect = 5e-34
 Identities = 71/157 (45%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
 Frame = +3

Query: 132 MSTNMKLYTILFN-LYVALISVDGVKKFHLGRSNGGNLGIPGGDYQSNLPPPQWFKQKLD 308
           M +N++ +   F  L+ A    + V+  +LGR  GG L  P      + PP  WF Q+LD
Sbjct: 33  MRSNIQQFLFFFTFLFTAFYEGEAVR-LYLGRPKGGMLQAPKIPLGFSAPPENWFIQRLD 91

Query: 309 HSNPSDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWINYAKKFNALY 488
           H + S+  TWKQR+Y ND+F   K+  PVFLM+GGEG     W++ G  + YA+ F A+ 
Sbjct: 92  HFDDSNTETWKQRFYYNDTFRKTKDS-PVFLMVGGEGAISPVWVLIGNMMKYAEGFGAMA 150

Query: 489 INLEHRFYGESHPTLDLSIKNLQFLSSYQALADLANF 599
             LEHRFYG+SHP  D+S  NL++L+S QALADLA F
Sbjct: 151 FILEHRFYGQSHPRSDMSDANLKYLNSEQALADLAAF 187



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +2

Query: 596 FYQFMKQKFRLNEKVKWIAFGGSYP 670
           F Q M  KF L +  KWI+FGGSYP
Sbjct: 187 FRQAMSVKFNLTDS-KWISFGGSYP 210


>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
          Length = 1224

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
 Frame = +3

Query: 291 FKQKLDHSNPSDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWINYAK 470
           F+Q +DH N     T+KQRY   + ++D K  GP+F   G EG     W  +G     AK
Sbjct: 29  FEQTVDHFNFIQSGTFKQRYLYTEKYWDGK--GPIFFYSGNEGGITGFWENSGFVFEAAK 86

Query: 471 KFNALYINLEHRFYGESHP--TLDLSIKNLQFLSSYQALADLANFI 602
            F+AL I  EHR+YGES P       I+N+ +LS  QALAD A  I
Sbjct: 87  NFSALVIFGEHRYYGESLPFGQDSFKIENIGYLSIEQALADFATLI 132


>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 563

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
 Frame = +3

Query: 291 FKQKLDHSNPSDL-RTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWINYA 467
           F+Q +DH   +   RT+ QRY++N +F+   + GPV L +GGE      + + G  ++ A
Sbjct: 117 FEQYIDHFEFTPRPRTYLQRYWMNRAFWKGPD-GPVLLYVGGESVLSGGY-IAGHIVDIA 174

Query: 468 KKFNALYINLEHRFYGESHPTLDLSIKNLQFLSSYQALADLANFIS 605
           K++ AL   +EHR+YG+S+    L  KN+++LSS  ALADLA F++
Sbjct: 175 KEYGALLFAVEHRYYGKSNFFGCLKTKNMRYLSSQLALADLAQFVA 220



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 593 QFYQFMKQKFRLNEKVKWIAFGGSYP 670
           QF    K KF L +K KWI +GGSYP
Sbjct: 217 QFVAHAKNKFGLTDKNKWITYGGSYP 242


>SB_40562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 42.3 bits (95), Expect(2) = 1e-05
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = +3

Query: 285 QWFKQKLDHSNPSDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWINY 464
           ++F QKLDH N     T+ QRY VN    +++  GP+F   G EG  D  W    T   Y
Sbjct: 52  KYFTQKLDHFNFRTSATFSQRYLVN--IANWRKGGPIFFYTGNEG--DITWFANNTSPKY 107



 Score = 24.2 bits (50), Expect(2) = 1e-05
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 540 SIKNLQFLSSYQALADLANFI 602
           S K L +LSS QALAD A  I
Sbjct: 104 SPKYLGYLSSEQALADFATLI 124


>SB_12974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 453 WINYAKKFNALYINLEHRFYGESHP 527
           W N AK+F A+ +  EHR+YGE+ P
Sbjct: 4   WDN-AKEFGAMLVFAEHRYYGETLP 27


>SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)
          Length = 628

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 267 SNLPPPQWFKQKLDHSNPSDLRTWKQRYYVNDSFYDFKN 383
           +NL   QW KQ   H  P+ +RT+  R   + +  D+K+
Sbjct: 167 ANLDCKQWSKQTFKHKGPTHIRTFVHRNVDDAAKQDYKD 205


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +3

Query: 123  SNQMSTNMKLYTILFNLYVALISVDGVKKFHLGRSNGGNLGIPGGDYQSNLPPPQWFKQK 302
            S   +T  ++Y ++  +  +  +  G  KF +G  N G+      D+  +LP  + FK +
Sbjct: 1162 SADSATPEQIYVLMKEIIKSFTTKFGTSKFRVGVVNAGSSPTRVFDFSDSLPDKESFKNE 1221

Query: 303  LD 308
            ++
Sbjct: 1222 IE 1223


>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
          Length = 1686

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +3

Query: 123  SNQMSTNMKLYTILFNLYVALISVDGVKKFHLGRSNGGNLGIPGGDYQSNLPPPQWFKQK 302
            S   +T  ++Y ++  +  +  +  G  KF +G  N G+      D+  +LP  + FK +
Sbjct: 904  SADSATPEQIYVLMKEIIKSFTTKFGTSKFRVGVVNAGSSPTRVFDFSDSLPDKESFKNE 963

Query: 303  LD 308
            ++
Sbjct: 964  IE 965


>SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 604

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
 Frame = +3

Query: 237 NLGIPGGDYQSNLPPPQWFKQKLDHSNPSDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGE 416
           N+G     Y       Q  +Q  D  NP     WK R   ND+   +   G VF      
Sbjct: 44  NVGGDNARYMCPRAKEQKTEQDTDPGNPWWSEYWKLRRSQNDTLVPYAGYGHVFATPTAP 103

Query: 417 GPADARWMVTGTWINYAK-KFNALY 488
              D +   T T ++Y+    NA+Y
Sbjct: 104 S-TDGKDKETSTHLSYSSYLINAVY 127


>SB_43773| Best HMM Match : TPR_1 (HMM E-Value=0.26)
          Length = 419

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 501 HRFYGESHPTLDLSIKNLQ-FLSSYQALAD 587
           HR +G   P  D + +NL+ FL  YQA A+
Sbjct: 214 HRVFGVHDPNNDFAARNLEFFLQEYQAKAN 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,092,697
Number of Sequences: 59808
Number of extensions: 407394
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)