Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c15
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)                  28   5.4  
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                28   5.4  
SB_55645| Best HMM Match : Herpes_UL73 (HMM E-Value=5.2)               28   7.1  
SB_41885| Best HMM Match : SPC12 (HMM E-Value=3.4)                     27   9.4  
SB_36895| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.4  
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_6495| Best HMM Match : RVT_1 (HMM E-Value=1.2e-17)                  27   9.4  
SB_23002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)
          Length = 633

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 366 HVSYAVRQRRPWSW*PRLTKPRCPLSTVSIP 274
           ++S  + ++ P S  P + +  CPLSTVSIP
Sbjct: 602 YLSKKIVKKEPKSKTPSMRQVYCPLSTVSIP 632


>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 80  SKRENQGISGDTNSNKMLFLFPATERSHRFCIHEFD 187
           SK+EN+ +S    ++K   L P TE  +     EFD
Sbjct: 89  SKKENKQLSSPEETDKQFVLTPRTEAKYNKINEEFD 124


>SB_55645| Best HMM Match : Herpes_UL73 (HMM E-Value=5.2)
          Length = 148

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 382 SFIRRTCFLCSATTKTVVMVTSINKATVSTINRINS 275
           +F   +C++ +    T+ ++ SI   T++TIN IN+
Sbjct: 110 AFTSTSCYVQAIQLSTINVLQSIQSNTINTINTINT 145


>SB_41885| Best HMM Match : SPC12 (HMM E-Value=3.4)
          Length = 171

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 126 RCCFCFPLRRGLIAFAYTNLILTLVVTSFLSLYISVI 236
           RC  C+P+  GL       L++ ++V+ FL + +S+I
Sbjct: 61  RCAVCYPVVEGLSQL----LLMAMIVSLFLGIVLSLI 93


>SB_36895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 382 SFIRRTCFLCSATTKTVVMVTSINKATVSTINRINS 275
           +F   +C++ +    T+ ++ SI   T++TIN +N+
Sbjct: 32  AFTSTSCYVQAIQLSTINVLQSIQSNTINTINTVNT 67


>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -3

Query: 217  DKNDVTTKVRIKFVYAKAMRPLRSGKQKQHLVRIGISTDSLIFSFRLL*SVADMFTIR 44
            D  ++T +V+ + VY     PL+ G  +  L  IGI+T       R +     M+ +R
Sbjct: 2988 DTCEITGRVKGRSVYLNGFGPLQIGGVETDLTFIGITTTGFRGCIRNIIDTEKMYDLR 3045


>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -3

Query: 211 NDVTTKVRIKFVYAKAMRPLRSGKQKQHLVRIGISTDSLIFSFRLL 74
           +D+T +V    +  KA R L + +Q   L R G+STD++I  +R L
Sbjct: 746 HDLTWEVHCDSIVKKANRRLYAIRQ---LKRCGVSTDNIIVVYRSL 788


>SB_6495| Best HMM Match : RVT_1 (HMM E-Value=1.2e-17)
          Length = 554

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -3

Query: 211 NDVTTKVRIKFVYAKAMRPLRSGKQKQHLVRIGISTDSLIFSFRLL 74
           +D+T +V    +  KA R L + +Q   L R G+STD++I  +R L
Sbjct: 371 HDLTWEVHCDSIVKKANRRLYAIRQ---LKRCGVSTDNIIVVYRSL 413


>SB_23002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 382 SFIRRTCFLCSATTKTVVMVTSINKATVSTINRINS 275
           +F   +C++ +    T+ ++ SI   T++TIN +N+
Sbjct: 35  AFTSTSCYVQAIQLSTINVLQSIQSNTINTINTVNT 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,087,209
Number of Sequences: 59808
Number of extensions: 365564
Number of successful extensions: 999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)