Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c14
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36944| Best HMM Match : 3_5_exonuc (HMM E-Value=6.9)                31   0.61 
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)                   31   0.80 
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15)                   28   4.3  
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)                 28   5.7  
SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)                   28   5.7  
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)                   27   7.5  
SB_10632| Best HMM Match : DEP (HMM E-Value=0.78)                      27   7.5  
SB_54267| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_44777| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_36944| Best HMM Match : 3_5_exonuc (HMM E-Value=6.9)
          Length = 227

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +1

Query: 202 GGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGPHYRLAD 324
           G    APIP YP  G+ G A     +GTNY  G P Y  A+
Sbjct: 179 GDYEPAPIP-YPG-GFIGNAILNGCFGTNYSQGDPCYSPAE 217


>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 178 GTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAG 276
           GT+   P GG  +   P  P AGY G  P  AG
Sbjct: 626 GTHTAPPAGGYPTGQHPPPPPAGYPGYGPPPAG 658



 Score = 28.3 bits (60), Expect = 4.3
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
 Frame = +1

Query: 142 GQDYFRDKRSQYGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGY-----GTNYVYGGP 306
           GQ Y  D R+  G    +P         P +PS GY   +P   G+      T Y  G P
Sbjct: 566 GQTYVPDHRTTGGYPAPTPSYPQPGTYPPPHPSGGYPQPSPPHGGHPHHPPPTGYPGGYP 625

Query: 307 HYRLADPA 330
               A PA
Sbjct: 626 GTHTAPPA 633


>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
          Length = 135

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 103 PSVLPDTKGSLRNGQDYFRDKRSQ-YGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGY 279
           P + P   G   +GQ Y     SQ YG   TS   G    P P  PSA  +  AP  AGY
Sbjct: 72  PGIAPGIGGPPPSGQ-YGAPPTSQPYGAPPTSGYPGYQQHPPPPQPSAQSY-NAPPPAGY 129

Query: 280 G 282
           G
Sbjct: 130 G 130


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 299  EDLTID*QTRLSLIQKCLDIRIWTNTCNIC 388
            ++LT D   R  +I  C +IR W + CN C
Sbjct: 1207 DELTYDISDRYWIIAACEEIREWEHECNKC 1236


>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2286

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +1

Query: 136 RNGQDYFRDKRSQYGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGPHYR 315
           RNG+ +   +R+ +   + +P   A++ P+P+ P +      P +A +   + YGG HY 
Sbjct: 597 RNGKGHPCHQRTLFRLQWEAP-SQAATPPLPSPPPS-----TPFEAVFADFFDYGGHHYL 650

Query: 316 LA 321
           +A
Sbjct: 651 VA 652


>SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15)
          Length = 364

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 208 ASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGPHY 312
           A++ P+PTYP +      P +A Y   + +GG HY
Sbjct: 186 AATPPLPTYPPS-----TPFEAVYADFFDFGGRHY 215


>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
          Length = 496

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 151 YFRDKRSQYGTYYTSPCGGASSAPIPTYPSAGYHGQ-APAQAGY 279
           Y  + R   GT      GG  S P+ +  SAGY G  A   +GY
Sbjct: 361 YSSESRGYSGTADPDVAGGRGSIPLSSRESAGYGGAGATPYSGY 404


>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
          Length = 1106

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 235 PSAGYHGQAPAQAGYGTNYVYGGPHYRL 318
           PS G+HG APA    G    YG   + L
Sbjct: 600 PSPGWHGGAPAAPAIGPESFYGDNKFAL 627


>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 226 PTYPSAGYHGQAPAQ-AGYGTN-YVYGGPHYRLADPA 330
           PTYP+ GY   +P+Q +GY T  +      Y   DP+
Sbjct: 162 PTYPNMGYPTNSPSQLSGYSTRAFTAEWDPYYTGDPS 198


>SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)
          Length = 628

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +1

Query: 100 APSVLPDTKGSLRNGQDY--FRDKRSQYGTYY----TSPCGGASSA 219
           A S   D K S RN + Y   +D R Q G YY    ++ CGG S++
Sbjct: 393 AKSKPSDKKSSPRNDRGYRQIQDFRGQVGGYYGHRSSAKCGGVSAS 438


>SB_10632| Best HMM Match : DEP (HMM E-Value=0.78)
          Length = 500

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 176 TGLITRHHAAERLLRQFLPTHRLDTMARHLPRRDMEQTTSTEDLTI 313
           TGL   HH  ER L   L + R +       R D+E T  TE++++
Sbjct: 382 TGLELGHHLLERNLLICLGSRRDNQQPSSDSRDDVEYTMDTEEVSV 427


>SB_54267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 226 PTYPSAGYHGQAPAQ-AGYGT 285
           PTYP+ GY   +P+Q +GY T
Sbjct: 48  PTYPNMGYPTNSPSQLSGYST 68


>SB_44777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 158 VTNVRNTGLITRHHAAERLLRQFLPTHRLDTMARHLPRRDMEQTTSTE 301
           +T +R  G +T HH +  L+  FLP    +   ++   +  + T +T+
Sbjct: 56  ITVLRRFGTVTHHHLSYHLVPLFLPMFNQENSKKNGNYKSGKTTVNTD 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,923
Number of Sequences: 59808
Number of extensions: 361362
Number of successful extensions: 915
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)