Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c12
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   4e-24
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.54 
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    29   2.2  
SB_3901| Best HMM Match : PkinA_anch (HMM E-Value=2.4)                 29   2.2  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          29   2.9  
SB_42275| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=0)             27   8.8  
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   27   8.8  
SB_22304| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score =  108 bits (259), Expect = 4e-24
 Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 7/137 (5%)
 Frame = +1

Query: 121 MSSGMPELGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQSQ 300
           M+S +P +GS I+L+SKA+IRY G L+ +D +E T+ LA+VRSFGTE R+    + P+++
Sbjct: 1   MTSSIPYIGSIINLVSKAEIRYVGTLYAIDTKESTVTLANVRSFGTEGRKVDVEIPPRNE 60

Query: 301 VYDYILFRGSDIKDIRV-------LNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFN 459
           +Y+YI+FRG DIKD+ V          VP  P DPAI+Q S      T   PG Y    +
Sbjct: 61  IYEYIVFRGQDIKDLNVKLESNETSKTVPQPPQDPAILQSS------TAGIPGGYSPYRS 114

Query: 460 HPVVGQTPYPQYHPMAG 510
            P     P P Y P +G
Sbjct: 115 GP---YQPNPGYSPFSG 128


>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 525 NSTWKASH-WMILRIWSLSNNWMVKLPHILPRSWSSTQSW 409
           ++ W A H W     WS  NNW +        +WS+  +W
Sbjct: 3   HNNWSAYHNWSTYENWSSHNNWSIHNNWSTHNNWSTYNNW 42



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 516 WKA-SHWMILRIWSLSNNWMVKLPHILPRSWSSTQSW 409
           W + ++W I   WS  NNW          +WS+  +W
Sbjct: 18  WSSHNNWSIHNNWSTHNNWSTYNNWSTHNNWSTYNNW 54



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = -1

Query: 522 STWKA-SHWMILRIWSLSNNWMVKLPHILPRSWSSTQSW 409
           + W   ++W     WS  NNW  +       +WS+  +W
Sbjct: 82  NNWSTHNNWSTYNNWSTHNNWNTRNNWSTHNNWSTYNNW 120



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -1

Query: 525 NSTWKA-SHWMILRIWSLSNNWMVKLPHILPRSWSSTQSWGYRH 397
           ++ W   ++W     WS  NNW          +WS+  +W  R+
Sbjct: 63  HNNWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNWSTHNNWNTRN 106


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -1

Query: 522 STWKASHWMILRIWSLSNNWMVKLPHILPRSWSSTQSW 409
           + W  ++W     WS  NNW          +WS+  +W
Sbjct: 51  NNWSHNNWSTYNNWSTYNNWSTYNNWSTYNNWSTYHNW 88



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -1

Query: 537 ELVVNSTWKA-SHWMILRIWSLSNNWMVKLPHILPRSWSSTQSW 409
           +L  ++ W   ++W     WS  NNW          +WS+  +W
Sbjct: 297 QLDTHNNWSTHNNWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNW 340


>SB_3901| Best HMM Match : PkinA_anch (HMM E-Value=2.4)
          Length = 239

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 457 NHPVVGQTPYPQYHPMAGFPSGVHNQL 537
           N PV+G +PY +   +  F +G+H QL
Sbjct: 131 NIPVLGDSPYQEVADLTFFGNGIHKQL 157


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +1

Query: 373 PNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSG 522
           P +  +     PP  G  P PG Y G    P  G   YP   P  G+P G
Sbjct: 219 PQNHPLTNYPAPPPQGYAPPPGGYPGA---PPAG--GYPGAPPPGGYPGG 263


>SB_42275| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=0)
          Length = 210

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 388 WQDHWALKEHYLAP*YP*CQNHGTECSHILGFEVLPDI 275
           WQ    +KEH + P  P    H   C+   G E+ P I
Sbjct: 165 WQLMHDIKEHGILPEVPELSAHRVSCAQESGIELAPTI 202


>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 322 RGSDIKDIRVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTP 483
           RG+  +++  LN VP  P+ P  M M+       GP P   V +   P     P
Sbjct: 153 RGNSSREMSQLNPVPDYPDYPGGMPMNGYHQPNYGPPPASPVSRGFAPATSPGP 206


>SB_22304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 423 WTSSWAVCGAV*PSSCWTNSISSVSSNGWLSKWSSQPAQQ 542
           W       G   P+SC         + GW+S+ SSQP+ Q
Sbjct: 207 WYRFLGAAGNAMPTSCVPVKRCGTHAPGWISRISSQPSLQ 246


>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = +1

Query: 358 NVPSMPNDPAIMQMSVPPT--LGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHN 531
           N+ S P   A   +  P     G    P QY GQ +    GQ PYP   P    P  V N
Sbjct: 372 NLQSGPPQSAQQPIGTPQGNHQGMPQHPSQYYGQKSPFPPGQAPYPGNQPPG--PFSVQN 429

Query: 532 QLNKTSS 552
             ++  S
Sbjct: 430 NTSQVQS 436


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,264,416
Number of Sequences: 59808
Number of extensions: 440364
Number of successful extensions: 1093
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)