Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c10
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)                31   0.57 
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_43240| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)         28   7.1  
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)         28   7.1  
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)         28   7.1  
SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6)            28   7.1  
SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)              28   7.1  
SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.1  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    27   9.4  
SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)               27   9.4  
SB_4398| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)              27   9.4  
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)                 27   9.4  
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             27   9.4  

>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
          Length = 518

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
 Frame = +3

Query: 318 VPERILVIGQ-DQHVGTKAPPREIQLDNAVLPTDPGMVRVSTPPRIITLDQH---YFPSA 485
           +PE+I   GQ D++   K    EI   N+       M+  +TP  ++    H   Y+   
Sbjct: 334 IPEKIKCYGQGDENASLKRTKTEITSPNSTFNHASRMLPTNTPSPLVQNGSHHFIYYHGE 393

Query: 486 DDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPD 587
           D   +G  + S   +I   + +     T++  PD
Sbjct: 394 DQLSNGEKSTSQDNSIIITQDRTSPNNTSSSAPD 427


>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 114 FL*FISFGWIYQNTVRRQILVYFSQIVILLT 22
           FL +++FG   +N  R QILV F+ ++I+ T
Sbjct: 803 FLPYVTFGRFDRNRKRVQILVAFAVVIIMYT 833


>SB_43240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 144 ININSMQYPPEEAYTRLISHNMTVPQRIKATGDIIDDETAPNGMVS 281
           + + ++  P  E Y   +SHN   PQ+I+     I+ E A N  VS
Sbjct: 64  LQLKTLATPLTEHYFFTVSHNSPSPQKIQVYAFGIEVEIAANYQVS 109


>SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)
          Length = 895

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 198 SHNMTVPQRIKATGDIIDDETAPNGMVSGWDY 293
           SHN  V + +K   D+  DE  PNG+   W Y
Sbjct: 553 SHNNYVSEIMKGI-DLESDEPRPNGVKRAWSY 583


>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
          Length = 843

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 198 SHNMTVPQRIKATGDIIDDETAPNGMVSGWDY 293
           SHN  V + +K   D+  DE  PNG+   W Y
Sbjct: 398 SHNNYVSEIMKGI-DLESDEPRPNGVKRAWSY 428


>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
          Length = 748

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 198 SHNMTVPQRIKATGDIIDDETAPNGMVSGWDY 293
           SHN  V + +K   D+  DE  PNG+   W Y
Sbjct: 466 SHNNYVSEIMKGI-DLESDEPRPNGVKRAWSY 496


>SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6)
          Length = 291

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 198 SHNMTVPQRIKATGDIIDDETAPNGMVSGWDY 293
           SHN  V + +K   D+  DE  PNG+   W Y
Sbjct: 181 SHNNYVSEIMKGI-DLESDEPRPNGVKRAWSY 211


>SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)
          Length = 799

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 25/93 (26%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
 Frame = +3

Query: 318 VPERILVIGQDQHVGTKAPPREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDF- 494
           VP     I  DQH     P   I L    +P      +V  P   ITL QH  P+     
Sbjct: 345 VPNPSGTITLDQH-NVPNPSGTITLHQHNVPNPSDRHKVPNPSGTITLHQHNVPNPSGTI 403

Query: 495 ---PHGMPNNSPPRNIKTYRSQGDGARTTTPRP 584
               H +PN S    +  +       R   P P
Sbjct: 404 TLDQHNVPNPSGTITLHQHNVPNPSDRHKVPNP 436


>SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1009

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 198 SHNMTVPQRIKATGDIIDDETAPNGMVSGWDY 293
           SHN  V + +K   D+  DE  PNG+   W Y
Sbjct: 436 SHNNYVSEIMKGI-DLESDEPRPNGVKRAWSY 466


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 546 SQGDGARTTTPRPDHFNESIMTESR 620
           S+ +G RTT P+P   +  I TESR
Sbjct: 355 SESNGGRTTVPQPGTDSSRIETESR 379



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 546 SQGDGARTTTPRPDHFNESIMTESR 620
           S+ +G RTT P+P   +  I TESR
Sbjct: 741 SESNGGRTTVPQPGTDSSRIETESR 765


>SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)
          Length = 91

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 438 TPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIMTES 617
           T PR+   ++H+  S+    HG P ++ PR +K  +S   G  TT       +   +T S
Sbjct: 33  TEPRLTAQERHHHRSSSVPAHGRPQSTEPR-LK--QSTATGQNTTITEESEVHGKHVTSS 89


>SB_4398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 408 PTDPGMVRVSTPPRIITLD 464
           PT+ G + VSTPPRI  +D
Sbjct: 5   PTNDGALHVSTPPRIKLID 23


>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
          Length = 269

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 438 TPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIMTES 617
           T PR+   ++H+  S+    HG P ++ PR +K  +S   G  TT       +   +T S
Sbjct: 33  TEPRLTAQERHHHRSSSVPAHGRPQSTEPR-LK--QSTATGQNTTITEESEVHGKHVTSS 89


>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
          Length = 419

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = +3

Query: 333 LVIGQDQHVGTKAPPREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPN 512
           L++ Q     +  PPR+ Q +N + P      + S+PP   T+ Q    S+        +
Sbjct: 236 LLLPQSDKQSSPPPPRDSQTNNHLFPPTGQSDKQSSPPPHGTVRQTIISSSLTGQSDKQS 295

Query: 513 NSPPRNIKTYRSQGDGARTTTP 578
           + PP      R Q D    +TP
Sbjct: 296 SPPPS-----RGQSDKQSPSTP 312


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 402  VLPTDP-GMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTP 578
            +L TD   M+R  +  R++     + P+ D  P+G P  S  R+   YR    G   +  
Sbjct: 1330 MLHTDAISMIRGGSKVRLVLRRSSHPPTIDGLPNGEPPRSLSRS--AYRKSSSGDEFSRG 1387

Query: 579  RP 584
            RP
Sbjct: 1388 RP 1389


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 528 NIKTYRSQGDGARTTTPRPDHFNESIMTES 617
           N  T   QG+G  +TTP     N+ + TES
Sbjct: 7   NTSTNEGQGNGTTSTTPSDRDANDIVTTES 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,073,148
Number of Sequences: 59808
Number of extensions: 475419
Number of successful extensions: 928
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)