Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c04
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            91   9e-19
SB_37522| Best HMM Match : TRAP-delta (HMM E-Value=0.11)               51   7e-07
SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_745| Best HMM Match : Aa_trans (HMM E-Value=0.047)                  28   7.2  
SB_46451| Best HMM Match : BAF (HMM E-Value=2.8e-17)                   27   9.6  

>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 41/90 (45%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
 Frame = +1

Query: 223 YITEFTLKCDNTLPENYGLYAEVDGKSLTAARIGEN-KYQISWTEEPAKARSGVHQINIL 399
           ++TEF+L CDN   ++  LYAEV+GK +   R  +N KYQ+SW+EE  +A+SGV+ IN L
Sbjct: 272 FLTEFSLACDNNT-KDVSLYAEVNGKVMPVTRSTDNSKYQVSWSEEHKQAKSGVYTINFL 330

Query: 400 DEEGWASLRRARRADPAASVAPLLAIQLSH 489
           DEEG+++ R+A+R+  +  + PL  I ++H
Sbjct: 331 DEEGYSNYRKAQRSGGSLDIKPLFTIDINH 360


>SB_37522| Best HMM Match : TRAP-delta (HMM E-Value=0.11)
          Length = 65

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
 Frame = +1

Query: 148 ESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPENYGLYAEVDGKSLTAARIGE 327
           E C  PK  ++ +TS +  + ++  ++TEF+L CDN   ++  LYAEV+GK +   R  +
Sbjct: 2   EPCVGPKATSTSYTSTNIFMSSETVFLTEFSLACDNN-AKDVSLYAEVNGKVMPVTRSTD 60

Query: 328 N-KYQ 339
           N KYQ
Sbjct: 61  NSKYQ 65


>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 29  ENCSLKFLKLDLPLRSQITKWSQKVLFILSQSLLSAVFAPNPVRTLKLKL 178
           ENC LK   +DLPL  +I      ++ +LS+   +    P+ V    LKL
Sbjct: 72  ENCQLKDAFVDLPLLGEICVTVNGIVKLLSRLKPNKACGPDQVSARILKL 121


>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 275 VCTLKSMENH*RPPESVKTNIRFPGPKNQRRLAPE 379
           +C  +  ++     E V T++RFP P +   LAPE
Sbjct: 64  ICETEDADSIAEALERVSTHLRFPSPTSVAALAPE 98


>SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 156 TGFGANTADKSDCDNINKTFC 94
           TGF +N  +KSDC N +K FC
Sbjct: 48  TGFESNE-EKSDCSNRSKPFC 67


>SB_745| Best HMM Match : Aa_trans (HMM E-Value=0.047)
          Length = 261

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/50 (40%), Positives = 22/50 (44%)
 Frame = +1

Query: 100 SFIYIITIALIGSICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKC 249
           S   I  IAL     AE    P +E S       TVV  I YI E T+KC
Sbjct: 143 SVALIAIIALFTYSIAEVA--PAIEGSMSDRSQFTVVIVITYIIEATIKC 190


>SB_46451| Best HMM Match : BAF (HMM E-Value=2.8e-17)
          Length = 87

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 159 LTGFGANTADKSDCDNINKTFCD 91
           + G GAN  +K+DC    K +CD
Sbjct: 62  IMGIGANNKEKNDCYEAMKGWCD 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,130,645
Number of Sequences: 59808
Number of extensions: 328054
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)