Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c03
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.60 
SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)                    30   1.4  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_49225| Best HMM Match : Vicilin_N (HMM E-Value=9.1)                 29   3.2  
SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_49671| Best HMM Match : Involucrin2 (HMM E-Value=7)                 29   4.2  
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)               29   4.2  
SB_33316| Best HMM Match : DUF329 (HMM E-Value=7.6)                    29   4.2  
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)                    28   5.6  
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        28   7.4  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)                   27   9.8  
SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 312 DAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLD 455
           D K W+P +  +   P   TEP+ ++P R    G+   AQ  NP N D
Sbjct: 606 DNKAWHPYHGHTVRAPV-ETEPSYHQPPRGQTNGQATNAQRANPINGD 652


>SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 26/104 (25%), Positives = 45/104 (43%)
 Frame = +3

Query: 180 NGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALP 359
           NG ++  +   RG + NN+    RRP+ +++E +V   +  L    ++      TS    
Sbjct: 282 NGVLNVVRRPRRGEEQNNEEERSRRPRVLTEEQRVRQRQRDLVLTEEQRVLKRQTSY--- 338

Query: 360 AYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENM 491
                   YR S   +   +R  Q  + Y LDD   + +EAE +
Sbjct: 339 -------EYRLSGEQI---VRNKQKDSEYELDDEQRARKEAEKL 372


>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
          Length = 434

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/51 (19%), Positives = 22/51 (43%)
 Frame = -2

Query: 501 PVDPCFQLLQVNKTCHPNCMDFDLELDEVYLVQRGEMVYMGQVQCCKRVAL 349
           P DPC+   +  K C      +D+++  +Y+      + +G    C  + +
Sbjct: 137 PGDPCYTAKETTKQCRQYLSVYDIDVSRIYVNYHNHFIMLGFCYRCLSIII 187


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = +3

Query: 222 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAK---EWYPANYTSQALPAYNTEPAPYRP 392
           Q  N    LR+PK +     V ++KS L           P +  S + P     P P RP
Sbjct: 169 QPTNPIPSLRQPKNIPLSTSVTSAKSSLDHCTSFQINMLPEHACSSSHPLTRPIPKPQRP 228

Query: 393 SRPSVQG 413
            +PS  G
Sbjct: 229 PQPSKSG 235


>SB_49225| Best HMM Match : Vicilin_N (HMM E-Value=9.1)
          Length = 121

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/93 (25%), Positives = 40/93 (43%)
 Frame = +3

Query: 213 RGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRP 392
           RG + NN+    RRP+ +++E +V   +  L    ++      TS            YR 
Sbjct: 17  RGEEQNNEEERSRRPRVLTEEQRVRQRQRDLVLTEEQRVLKRQTSY----------EYRL 66

Query: 393 SRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENM 491
           S   +   +R  Q  + Y LDD   + +EAE +
Sbjct: 67  SGEQI---VRNKQKDSEYELDDEQRARKEAEKL 96


>SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 25/106 (23%), Positives = 46/106 (43%)
 Frame = +3

Query: 174 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 353
           ++ GD    +   RG + NN+    RRP+ +++E +    +  L    K+      TS  
Sbjct: 4   ISRGDKRVKEDPRRGEEHNNEEERSRRPRVLTEEQRARQRQRDLVLTEKQKVRKRQTS-- 61

Query: 354 LPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENM 491
                   + YR S    + R+R+ Q  + Y L+D   + +EA  +
Sbjct: 62  --------SEYRLSG---EQRVRKKQKDSEYELNDEQRARKEAAKL 96


>SB_49671| Best HMM Match : Involucrin2 (HMM E-Value=7)
          Length = 145

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 24/107 (22%), Positives = 46/107 (42%)
 Frame = +3

Query: 174 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 353
           ++ GD    +   RG + NN+    RRP+ +++E +    +  L    ++      TS  
Sbjct: 4   LSRGDKRVEEEPRRGEERNNEKERSRRPRVLTEEQRARQRQRDLVLTEEQRVRKRQTS-- 61

Query: 354 LPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 494
                   + YR S    + R+R+ Q  + Y LDD   + +   N++
Sbjct: 62  --------SEYRLSG---KQRVRKKQKDSEYELDDEQRARKRQRNLE 97


>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
          Length = 405

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +3

Query: 297 SKLSADAKEWYPANYTSQALP--AYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLD 455
           SK S   KEW   +  ++++P   Y  E   Y+ S   + G +     Q  YNLD
Sbjct: 197 SKFSFKTKEWKYVSTQNESVPFPRYRHEAVDYKGSFYVIGGGMGSTDPQEFYNLD 251


>SB_33316| Best HMM Match : DUF329 (HMM E-Value=7.6)
          Length = 102

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 24/107 (22%), Positives = 45/107 (42%)
 Frame = +3

Query: 174 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 353
           ++ GD    +   RG + NN+    RRP+ +++E +       L    ++      TS  
Sbjct: 4   LSRGDKRVEEEPRRGEERNNEEERSRRPRVLTEEQRARKRARDLVLTEEQRVRKRQTS-- 61

Query: 354 LPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 494
                   + YR S    + R+R+ Q  + Y LDD   + +   N++
Sbjct: 62  --------SEYRLSG---EQRVRKGQKDSEYELDDEQRARKRQRNLE 97


>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
          Length = 861

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 25/107 (23%), Positives = 47/107 (43%)
 Frame = +3

Query: 174 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 353
           ++ GD    + R RG + NN+    RRP+ +++E +    +  L    ++      TS  
Sbjct: 4   LSRGDKRVEEPR-RGEEQNNEDERSRRPRVLTEEQRARQRQRDLVLTEEQRVRKRQTS-- 60

Query: 354 LPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 494
                   + YR S    + R+R+ Q  + Y LDD   + +   N++
Sbjct: 61  --------SEYRLSG---KQRVRKGQKDSEYELDDEQRARKRQRNLE 96


>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 171 KMNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKS 299
           K     I   KGRGRG  +  +A+E++ P       KVD +K+
Sbjct: 439 KQTESGIHFGKGRGRGSALREKAKEIKNPG--EKLQKVDVTKT 479


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 249 RRPKAVSDEPKVDTSKSK----LSADAKEWYPANY 341
           R+P+A+S +PK+ TS S+    +S +   W P  Y
Sbjct: 316 RKPRAISWQPKLATSASRTPTVVSKEVAVWNPVEY 350


>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
          Length = 1115

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 564 CQTCP-GQRLSHT*QLSSLLCSPVDPCFQLLQVNKTCHPNCMDFDLELD 421
           CQ CP GQ       +SS  CSP D    ++ ++ +C   CM+   ELD
Sbjct: 384 CQKCPEGQSAPAGANVSS--CSPSDDKVPMVPLHVSCDNTCME-GKELD 429


>SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 90  RRHVFRSQGSTRKQRNLCNSNLVAGR 13
           R  V R  G+T+++ NLC +  V GR
Sbjct: 565 RNPVVRGAGTTKRRENLCYNRKVTGR 590


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = +3

Query: 246  LRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEP------APYRPSRPSV 407
            L+RP+ V+  PK +  + K  A AK     + T QA P     P      +P   S+P  
Sbjct: 2792 LQRPEGVAPSPKPEKPQRKPRARAKS--KDSLTPQASPLPGQGPPADWMNSPPAASKPGP 2849

Query: 408  QGRLRQAQDQNPYNLDDMSYSLEE 479
            + R ++++ Q+  +LDD    L++
Sbjct: 2850 KPRGKKSKKQS--DLDDPEIQLQQ 2871


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,142,775
Number of Sequences: 59808
Number of extensions: 470555
Number of successful extensions: 1233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)