Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c01
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8162| Best HMM Match : No HMM Matches (HMM E-Value=.)               76   3e-14
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   2.8  
SB_25948| Best HMM Match : Globin (HMM E-Value=1.5e-18)                28   8.7  

>SB_8162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 34/45 (75%), Positives = 40/45 (88%)
 Frame = +1

Query: 88  YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKR 222
           Y+NK  LAPMVRIGTLP RLLAL+YGAD+VYTEE+ID+K LR+ R
Sbjct: 64  YQNKYFLAPMVRIGTLPARLLALRYGADLVYTEEIIDFKMLRTTR 108


>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/76 (30%), Positives = 43/76 (56%)
 Frame = +1

Query: 352 LKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKI 531
           ++ A LVE +   +D+N+GCP+  + +G  G  L  + +   +++K   + LS+P+TCKI
Sbjct: 256 VQAALLVESECDGVDLNLGCPQHIAKRGHYGAFLQDEWELLEKMVKLAHEKLSVPITCKI 315

Query: 532 RILKTPEATLELVNKL 579
           R+    + T+     L
Sbjct: 316 RVFDDVQKTIAYAKML 331


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +1

Query: 217 KRRFNDILNTVDYV--DQTDGTIVFRTCEEEKKKVVLQLGTCDE 342
           K+  +D+ N +D +  D  +   + ++ E+EK+K+++QLG+ D+
Sbjct: 721 KKEIDDLNNEIDELRSDLMNTKSLLQSSEDEKRKLMIQLGSKDD 764


>SB_25948| Best HMM Match : Globin (HMM E-Value=1.5e-18)
          Length = 223

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 377 CSTNLATFKALASSHVPSCKTTFFFSSSQV 288
           C+++LAT   L   H+P+C+T +     Q+
Sbjct: 3   CASSLATQTKLLKGHLPTCETQYLTKVDQL 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,925,860
Number of Sequences: 59808
Number of extensions: 405159
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)