Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10b24
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 30 1.3
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0) 29 3.1
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_45837| Best HMM Match : Fez1 (HMM E-Value=0.77) 28 5.4
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 28 5.4
SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2) 28 5.4
SB_35915| Best HMM Match : DUF593 (HMM E-Value=0.12) 28 7.1
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28) 28 7.1
SB_47292| Best HMM Match : DUF1187 (HMM E-Value=2.9) 28 7.1
SB_27931| Best HMM Match : Filament (HMM E-Value=0.028) 27 9.4
SB_23319| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_11532| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08) 27 9.4
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/99 (27%), Positives = 44/99 (44%)
Frame = +3
Query: 258 LQRRINVLENDNMRLKLDATRNNENIAFRDDDKLDLLQKIAELNKQKSQLMHHVFMVSCE 437
L+ RIN LEN R+ + R E++ L Q+I +L K ++ L + E
Sbjct: 1392 LENRINELENMLARISAERDRALEDLRTSTAKISTLEQQIRDLTKDRNSLDEKIE----E 1447
Query: 438 NRNLWNKISTIKNCNKPNKENVKNPLVRTNTYIQSTPKT 554
R N + KN + + +K+ + N I+S KT
Sbjct: 1448 LRRQVNTLRDEKNIVERDLNELKSKIDYYNQEIESRDKT 1486
Score = 27.5 bits (58), Expect = 9.4
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 14/107 (13%)
Frame = +3
Query: 228 LHAMRDRCLLLQRRINVLENDNMRLKLDATRNNENIAFRDDDKLDLLQKIAELNKQKSQL 407
+ +R + L+ N++E D LK N+ I RD DL K EL +Q L
Sbjct: 1445 IEELRRQVNTLRDEKNIVERDLNELKSKIDYYNQEIESRDKTIEDLKLKRDELERQMDAL 1504
Query: 408 MHHVFMVSCE--------------NRNLWNKISTIKNCNKPNKENVK 506
+ V + NR++ KI I+ N ++EN K
Sbjct: 1505 KKDMRRVEADYETAIQKIENMEKANRSVNEKILIIEKSNDRDRENAK 1551
>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1589
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 137 IHYFLKQFHYNNIIL*KYIISPRIFF*NYVITVYIELNFFVS 12
I L +F Y ++ +++P +FF ++ V+I +N F+S
Sbjct: 1428 ISVMLGKFSYERLLQTNRLLAPFMFFFYSIVVVFILINMFIS 1469
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/95 (17%), Positives = 43/95 (45%)
Frame = +3
Query: 273 NVLENDNMRLKLDATRNNENIAFRDDDKLDLLQKIAELNKQKSQLMHHVFMVSCENRNLW 452
++ N++ + +++ NN N + +++ ++ + N S + ++ + N ++
Sbjct: 1789 SINNNNSSIINNNSSINNNNSSINNNNS-SIINNNSSNNNNNSSINNNNSSIINNNSSII 1847
Query: 453 NKISTIKNCNKPNKENVKNPLVRTNTYIQSTPKTS 557
N S+I N N N ++ N N I + T+
Sbjct: 1848 NNNSSINNRNNTNNNSINNRSNTNNNSINNRSNTN 1882
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 28.7 bits (61), Expect = 4.1
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Frame = +3
Query: 258 LQRRINVLENDNMRLKLDATRNNENIAFRDDDKLDLLQKIAEL-----NKQKSQLMHHVF 422
LQ + N LE L+ T EN+ +DK LL++I +L ++ ++ H+
Sbjct: 944 LQTKKNELEELLSDLEGRITEEEENVLALTEDKKKLLKEIQDLEDSLEEEESARQKLHLE 1003
Query: 423 MVSCEN--RNLWNKISTIKNCN-KPNKE 497
VSCE + L +S +++ N K +KE
Sbjct: 1004 KVSCEAKIKKLEEDLSLVEDTNSKISKE 1031
>SB_45837| Best HMM Match : Fez1 (HMM E-Value=0.77)
Length = 264
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 153 SFNNDSTFQATLKGDYNHHSVHELALHAMRDRCLLLQRRINVLENDNMRLKLDATRNNEN 332
SF D TF + KG N+ ++ ++ + L L + L+ + + L+ D EN
Sbjct: 30 SFLKDDTFMLSRKGKRNNKAISKVK----PKQYLALLQNFTDLKVEFLNLE-DEKHKLEN 84
Query: 333 IAFRDDDK-LDLLQKIAELNKQKSQLMH 413
R +DK L Q+ +L ++ S+L H
Sbjct: 85 ALLRSEDKYAKLSQEHEQLKEKYSELEH 112
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Frame = +3
Query: 213 VHELALHAMRDRCLLLQRRINVLENDNMRLKLDATRN-NENIAFRDDDKLDL----LQKI 377
VH+ A+ + + LQ++I++LE DN + + N EN+ + + + L +
Sbjct: 589 VHDKAIAHLTNEVTSLQKQIDILE-DNSQSESSMVENLKENLKVKSETVMQLNRDNEEVR 647
Query: 378 AELNKQKSQLMHHVFMVSCENRNL 449
AEL++ KS+L + + +N+ L
Sbjct: 648 AELDRMKSKLESVMQDLDVKNKEL 671
>SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)
Length = 1094
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -2
Query: 129 FPKTISLQQHYFIEVHNFTPYFLLKLCHNC--VHRIKLFCFTITT 1
F + I +Q E F +FL+K+ HNC + +I FTI T
Sbjct: 68 FVRVIGIQYSKMQEQSTF--FFLIKVTHNCSQISKISFIVFTIFT 110
>SB_35915| Best HMM Match : DUF593 (HMM E-Value=0.12)
Length = 371
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 300 LKLDATRNNENIAFRDDDKLDLLQKIAELNKQKSQLMHHVFMVSCE 437
LKL+ + F + L Q++ E+++QK+ L+H + +V E
Sbjct: 257 LKLELEKVERRFKFMKRELLTKTQQLEEVSEQKNNLLHEMGVVRTE 302
>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
Length = 552
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/81 (20%), Positives = 36/81 (44%)
Frame = +3
Query: 261 QRRINVLENDNMRLKLDATRNNENIAFRDDDKLDLLQKIAELNKQKSQLMHHVFMVSCEN 440
+ +I L+ + RL+ + R +I R DD I + NK+ S+L ++
Sbjct: 175 ESQIQALQQETERLRSEFQRLETDIKERTDDLEQRRSSIEQNNKEYSELKRKRDELTNTR 234
Query: 441 RNLWNKISTIKNCNKPNKENV 503
+ LW + + ++ +E +
Sbjct: 235 KELWRQEAAMEQTINTAREEL 255
>SB_47292| Best HMM Match : DUF1187 (HMM E-Value=2.9)
Length = 238
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 126 EIMDTSSIVSFNNDSTFQATLKGDYNH 206
++ +SI+ N FQ T+ GDYNH
Sbjct: 177 KLYSENSILRNNEVCNFQTTIDGDYNH 203
>SB_27931| Best HMM Match : Filament (HMM E-Value=0.028)
Length = 428
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +3
Query: 234 AMRDRCLLLQRRINVLENDNMRLKLDATRNNENIAFRDDDKLDLLQKIAELNKQKSQLMH 413
A +DR L + ++ V+E + R +L A + + KL +K+AE +K+K +L
Sbjct: 342 AEQDRALDMAKQALVIEVEEERARLMAVDRERSKLKEEIFKLQSDKKVAEGDKEKLKLKI 401
Query: 414 HVFMVSCENRN 446
++ E N
Sbjct: 402 EELKLNLEQTN 412
>SB_23319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 315 TRNNENIAFRDDDKLDLLQKI-AELNKQKSQLMHHVFMVSCENRNLWNKISTIKNCNKPN 491
T E++ + +DD +L+ + E +QK ++ + + + K + K KP
Sbjct: 68 TMTLESMNYEEDDVRRILEDLKVEQEEQKKRMARE--LEEAKKKVAKEKSAKPKESKKPE 125
Query: 492 KENVKNPLVRTNTYIQSTPKTS 557
+ K P I++TPK S
Sbjct: 126 TKKPKKPDTAPKATIKATPKPS 147
>SB_11532| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)
Length = 326
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 258 VIDNDPSWHEEPTREHCGDCSRL 190
V+ N ++H+ T +CGDC RL
Sbjct: 122 VVKNPLTYHDIITPHYCGDCRRL 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,350
Number of Sequences: 59808
Number of extensions: 343236
Number of successful extensions: 941
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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