Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10b19
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 138 5e-33
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 95 5e-20
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) 79 3e-15
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.056
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 29 4.9
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55) 28 6.4
SB_2403| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7) 28 6.4
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 28 8.5
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 28 8.5
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 138 bits (333), Expect = 5e-33
Identities = 67/163 (41%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Frame = +2
Query: 17 SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSV 196
S Y ++T FSP G L Q+EYA AV G T+VG++ +N VV+ E K + L + +V
Sbjct: 2 SGSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTV 61
Query: 197 NKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYT 376
K+ + H+ M ++G+ D R+LV +AR Q + L +P+ + + +AT+ Q YT
Sbjct: 62 RKICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYT 121
Query: 377 QSGGVRPFGVSLLICGWE-EGRPYLFQCDPSGAYFAWKATAMG 502
QS G RPFG+S LI G++ +G P L+Q DPSG Y AWK G
Sbjct: 122 QSNGRRPFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQSG 164
>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
Length = 308
Score = 95.1 bits (226), Expect = 5e-20
Identities = 49/132 (37%), Positives = 72/132 (54%)
Frame = +2
Query: 23 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 202
RY S + FSP G++ Q+EYA AV GT++ I+ +GVV E S LY+ + +
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKR 195
Query: 203 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQS 382
+ I HIGM +G+ D R +V AR+ A Y +Y PIP LV RV+ + +T
Sbjct: 196 IFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLY 255
Query: 383 GGVRPFGVSLLI 418
+RPFG + +
Sbjct: 256 SAMRPFGCRIYV 267
>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
Length = 224
Score = 79.0 bits (186), Expect = 3e-15
Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 6/227 (2%)
Frame = +2
Query: 38 LTTFSPSGKLVQIEYALAAVAAGG-TSVGIKASNGVVIATENKHKSILYDEHSVNKVEMI 214
+T FSP G+L + GG TSVGI+ ++ V+ T+ KV +
Sbjct: 13 ITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQK-------------KVPLP 59
Query: 215 TGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVR 394
D R V +AR A + + IP L +R+A + Q YTQ+ +R
Sbjct: 60 IPQA---------DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMR 110
Query: 395 PFGVSLLICGWEEGR-PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED--LELD 565
P G +++ G +E + P L++ DP+G + +KA ++G +FLEK+ + +
Sbjct: 111 PLGCGMILIGIDEEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTFN 170
Query: 566 DAVHTAILTLKEGFEGQMTADNIEVGI--CDASGFRRLXPAHVKDYL 700
+ V TAI L +EVG+ D FR+L A + +L
Sbjct: 171 ETVETAISCLSSVLSADFKPSELEVGVVSMDNPRFRKLTEAEIDTHL 217
>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +2
Query: 599 EGFEGQMTADNIEVGICDASGFRRLXPAHVKDYLA 703
E FEGQMT DNIE+G+C+ +GFRRL P VKDYLA
Sbjct: 29 ESFEGQMTEDNIELGVCNENGFRRLTPPEVKDYLA 63
Score = 58.4 bits (135), Expect = 5e-09
Identities = 22/30 (73%), Positives = 27/30 (90%)
Frame = +2
Query: 386 GVRPFGVSLLICGWEEGRPYLFQCDPSGAY 475
GVRPFGVSLL+ GW++ RPYLFQCDPS ++
Sbjct: 2 GVRPFGVSLLVAGWDDDRPYLFQCDPSESF 31
>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 41.1 bits (92), Expect = 9e-04
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 440 PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE---DLELDDAVHTAILTLKEGF- 607
P++FQ PS YF KA A+G + +T+LEK Y + D E ++ + + L+E
Sbjct: 4 PHIFQTCPSANYFDCKAMAIGARSQSARTYLEK-YLDAFGDCEPEELIKHGLKALRETLP 62
Query: 608 -EGQMTADNIEVGI 646
E ++T N +G+
Sbjct: 63 NEQELTTKNCSIGL 76
>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 35.1 bits (77), Expect = 0.056
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 254 DYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFG 403
D R V +AR A + + IP L +RVA + Q YTQ+ +RP G
Sbjct: 27 DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/61 (19%), Positives = 28/61 (45%)
Frame = +2
Query: 413 LICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILT 592
+ICGW++ P L+ D G + + ++G ++ Y D+ ++A + +
Sbjct: 154 MICGWDKKGPGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYDMSPEEAYDLGVRS 213
Query: 593 L 595
+
Sbjct: 214 I 214
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 485 KATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTADNIE 637
+A G F+ KT +DLE DA+H +L + G E + + D +E
Sbjct: 1178 QADPTGLEFHTEKTDENLLKEDDLETKDALHKDVLNEERGIEKENSFDWLE 1228
>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = +2
Query: 419 CGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLK 598
C W P + P A+ AW +A G L KR D +T L +
Sbjct: 459 CCWPTATPSI----PDPAFDAWTDSAAEGTPITGIVALRKRKPSG-SCADTFNTIALQTR 513
Query: 599 EGFEGQMTADNIEVGICD 652
EG E Q+ +++ G CD
Sbjct: 514 EGTERQVKTCSLKDGRCD 531
>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
Length = 1087
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = -3
Query: 488 LSMQNRLRRGHTGTGKDVLLPSHRSIEIPQRVGRHPTVCTXXXXXXXXXXXAQSGSAHDT 309
L++QN L+RG + DV P + +IE P G H G+
Sbjct: 406 LTLQN-LQRGEAQSTPDVEGPIYSAIEEPNNKGSHDDQPGVAPAYGVLEGMYSEGA--QN 462
Query: 308 SRSTAGP-SSLLESPVDDSLDPFPSKP 231
+ GP +LE P D LD ++P
Sbjct: 463 PQPVEGPVYGVLEGPNSDELDSIYNRP 489
>SB_2403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = -3
Query: 488 LSMQNRLRRGHTGTGKDVLLPSHRSIEIPQRVGRHPTVCTXXXXXXXXXXXAQSGSAHDT 309
L++QN L+RG + DV P + +IE P G H G+
Sbjct: 57 LTLQN-LQRGEAQSTPDVEGPIYSAIEEPNNKGSHDDQPGVAPAYGVLEGMYSEGA--QN 113
Query: 308 SRSTAGP-SSLLESPVDDSLDPFPSKP 231
+ GP +LE P D LD ++P
Sbjct: 114 PQPVEGPVYGVLEGPNSDELDSIYNRP 140
>SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)
Length = 380
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 47 FSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 205
+ +GKLV E+ + A TSV + ++T LY +H VNKV
Sbjct: 210 YGTTGKLVNDEFRVMR-ALNATSVATSLLSNTNVSTPLNGTFFLYRDHLVNKV 261
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 370 LLHDRSYSLH*LRSRDRLMIHQEVLLGHLPCLSHQ*TIVWTHSRVNHA 227
L+H S+S H L R +IH H LS TI+ THS +HA
Sbjct: 345 LIHTHSHS-HALSFTPRTVIHTH---SHPHALSFTRTIIHTHSHSHHA 388
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 176 LYDEHSVNKVEMITGHIGM-VYSGMGP 253
L +EHS NKV+M+ G+ G +Y GP
Sbjct: 367 LLEEHSNNKVKMVGGNTGKGIYKKDGP 393
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,623,622
Number of Sequences: 59808
Number of extensions: 520458
Number of successful extensions: 1420
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -