Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b18
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   31   0.68 
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               29   2.1  
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                28   4.8  
SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4)                   28   6.3  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   27   8.4  

>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +2

Query: 230 STPSDDD*TANTPAVHNISSTFSSIHGVSAAF--AAIYDCSSAAPSDLRQPTPVTAYVHK 403
           S+P+    T + P+   +    S      + F  +     ++AAPS   QPT  +  +  
Sbjct: 595 SSPTSQPQTTSQPSSGGLFGASSQASAPGSGFFGSKFSSSTTAAPSATSQPTTTSGGLFG 654

Query: 404 SAAPAPDV-RQSARAASATTGPAITSA 481
           ++AP+  V   S   AS+TT  + TS+
Sbjct: 655 ASAPSGGVFGSSTTTASSTTAQSSTSS 681


>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 27/104 (25%), Positives = 39/104 (37%)
 Frame = +2

Query: 158  DTSAVHTSGLRDFAHSSAVLYNSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIY 337
            D  A+  S  +   H      + P TP  D  +   P V   SS  ++     AA  +  
Sbjct: 765  DMDALTASLAQQSRHPPPGEASIPDTPVSDKASDKNPEVTEPSSYVNTEMASPAAAGS-- 822

Query: 338  DCSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPA 469
              SS  PS+LR   P  A+      P P    +   A A + P+
Sbjct: 823  --SSITPSNLRPTNPTPAHATDGGTPTPLRPTNPTPAHAASKPS 864


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 230  STPSDDD*TANTPAVHNISST 292
            STP+DD  T NTP+V N+  +
Sbjct: 1621 STPTDDSSTVNTPSVGNLGKS 1641


>SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4)
          Length = 248

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 374 PTPVTAYVHKSAAPAPDVRQSARAASATTGPAITSADHN 490
           PTPVTA V+  A+P P    +   A A+  P   +A  N
Sbjct: 119 PTPVTAKVNVDASPTPTPVTAKVNADASPNPTPVTAKVN 157


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 415 RPRCTSIRPCRLRYYWTCHY 474
           RPRC ++RPCR     TC Y
Sbjct: 399 RPRCCTLRPCRYTLR-TCRY 417


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 21/76 (27%), Positives = 29/76 (38%)
 Frame = +2

Query: 254  TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQ 433
            T + P    +    +S    S         ++AAP +   PT  TA    +AAP      
Sbjct: 2366 TTSAPKTTAVQEATASPETTSEPETTALPKTTAAP-ETTSPTETTAVPGTTAAPKTTASP 2424

Query: 434  SARAASATTGPAITSA 481
               A   TTG A T+A
Sbjct: 2425 ETTAKPDTTGAAETTA 2440


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 344 SSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTG-PAITSA 481
           ++ APS  R P P T  V  + APA     +   A  TTG P  T A
Sbjct: 316 TTGAPSTTRAP-PTTGAVTTTGAPATTGAPATTVAPTTTGAPTTTGA 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,151,245
Number of Sequences: 59808
Number of extensions: 163150
Number of successful extensions: 601
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)