Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b17
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2891| Best HMM Match : PAN (HMM E-Value=4.4e-05)                   102   3e-22
SB_4456| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)                       28   6.9  
SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_42852| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_5050| Best HMM Match : SSF (HMM E-Value=0.001)                      27   9.1  
SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)                       27   9.1  

>SB_2891| Best HMM Match : PAN (HMM E-Value=4.4e-05)
          Length = 271

 Score =  102 bits (244), Expect = 3e-22
 Identities = 49/95 (51%), Positives = 60/95 (63%)
 Frame = +1

Query: 331 PIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCYXXXXXXXXXXXNWTVVCNNDYWR 510
           PIKC+  IRLQH+ATK+NLHSH F SP+S NQEVS +           +W VVC+   W 
Sbjct: 3   PIKCDETIRLQHLATKRNLHSHHFQSPISHNQEVSAF-GEGGNGDNLDDWVVVCSKKNWE 61

Query: 511 RDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVG 615
           R   V+FRH  T  YL  +G  FGRPI+GQ E+ G
Sbjct: 62  RKDTVRFRHKITEMYLHITGDQFGRPIHGQREVSG 96


>SB_4456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 125 VFSLIIEMRNTTVTKVAIERIFVFSIFLEQNNPANPKN 12
           +FS+ +E RN+     + + +    +F EQ NP  PK+
Sbjct: 119 MFSVYVEARNSAGVAKSEQLVLTGPVFPEQMNPGPPKD 156


>SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 217  KYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRGAPIKCNTNIRLQHVATKKNLHS- 393
            K   G+ Q +  AVE +++  +++  R    + C+   PI+ N  I L H+ ++  L S 
Sbjct: 1052 KMSEGTAQDA-EAVEAAEEETAYFRTRAAILDECQLSHPIEAN-GIDLCHLYSRSRLTSL 1109

Query: 394  HFFTSPLS 417
               T PLS
Sbjct: 1110 SVATLPLS 1117


>SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)
          Length = 602

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 125 VFSLIIEMRNTTVTKVAIERIFVFSIFLEQNNPANPKN 12
           +FS+ +E RN+     + + +    +F EQ NP  PK+
Sbjct: 94  MFSVYVEARNSAGVAKSEQLVLTGPVFPEQMNPGPPKD 131


>SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 597 TIDGTTKCSPGACKIRSSINMSKFYWCISPP 505
           ++ GT  C+   C + + +     Y+CI PP
Sbjct: 20  SVQGTGLCASNPCTLGACMESPSGYYCICPP 50


>SB_42852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/85 (25%), Positives = 40/85 (47%)
 Frame = +1

Query: 139 NEFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETC 318
           +EF+T G +   I+        S   K   G+ Q +  AVE +++  +++  R    + C
Sbjct: 602 SEFLTPGQVQAFISRK------SAKSKMSEGTAQDA-EAVEAAEEETAYFRTRAAILDEC 654

Query: 319 KRGAPIKCNTNIRLQHVATKKNLHS 393
           +   PI+ N  I L H+ ++  L S
Sbjct: 655 QLSHPIEAN-GIDLCHLYSRSRLTS 678


>SB_5050| Best HMM Match : SSF (HMM E-Value=0.001)
          Length = 364

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 170 FNIDPHVTNSFFAASVFSLIIEMRNTTVTKVAIER 66
           FN DP V N+F+  ++      M   TV++ A++R
Sbjct: 206 FNPDPKVRNTFWTLTIGGAFTAMPVWTVSQTAVQR 240


>SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)
          Length = 442

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 170 FNIDPHVTNSFFAASVFSLIIEMRNTTVTKVAIER 66
           FN DP V N+F+  ++      M   TV++ A++R
Sbjct: 98  FNPDPKVRNTFWTLTIGGAFTAMPVWTVSQTAVQR 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,144
Number of Sequences: 59808
Number of extensions: 370356
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)