Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b16
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   0.91 
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   31   0.91 
SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)                   30   1.2  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      29   2.1  
SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_40741| Best HMM Match : UreF (HMM E-Value=0.65)                     28   6.4  
SB_10565| Best HMM Match : DUF1279 (HMM E-Value=1.3)                   28   6.4  
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = +1

Query: 148 QAVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILE-VYLETDMNRNL 324
           + +  + +  E  V    +  L  V++    +N   + Q+  +E++L+   + ++M + +
Sbjct: 313 EGILQKPSQREDEVIRGRENILRDVKAYRNTENCVENPQAPGDEIMLDFAAVISEMLQKV 372

Query: 325 GDDQVHVHAPKG--IVPGQTHNVDPNIKVRNQKDHA 426
            +D      P+G  ++PG    V+PNI+V N    A
Sbjct: 373 ENDDSSDSDPEGCLVLPGNEMAVNPNIQVINTTPRA 408


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 91   TRQGKCPARKVNIVRENYLQAVRMRRTIEEKRVNTS 198
            T   KCP R VNIV +   + VR RRT  ++ V+ S
Sbjct: 1190 TSVNKCPFRDVNIVHKKENKPVRSRRTRGQQGVDKS 1225


>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
          Length = 844

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 250 QVHAQSTNEEVILEVYLETDMNRNLGDDQV---HVHAPKGIVPGQTHNVDP 393
           QVH + ++ +V+ +VYL   +NR +   +    H H   G+  G+ +++ P
Sbjct: 82  QVHCRHSSPQVLHQVYLPCQVNRRICQSKTRKYHNHDENGLSRGKQNSLSP 132


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +1

Query: 262  QSTNEEVILEVYLETDMNRNLGDDQVHVHAPKGIVPGQTHNVDPNIKVRNQKDHAPGVDQ 441
            Q  N++  L   +    NR L   QV V AP G +P Q H   P+I  + Q    P   Q
Sbjct: 1590 QRFNQQQTLRRRMALMQNRGLPPPQVPVPAPTGGIPQQAH---PSIHPQMQTQQPPPYQQ 1646


>SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +1

Query: 124 NIVRENYLQAVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLE 303
           +IVR   L    + R + EKR      R      S  T  N++V + ST EE + E    
Sbjct: 383 SIVRSVALSFKMIGRMLREKREKQRQARSTSVSSSDRTRTNSEV-STSTIEEALRETRRR 441

Query: 304 TDMNRNLGD 330
             + R+ GD
Sbjct: 442 QSLLRHTGD 450


>SB_40741| Best HMM Match : UreF (HMM E-Value=0.65)
          Length = 266

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 145 LQAVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLETDMNRNL 324
           + AV    T   + +   V  D E++    T+++ +  A+  NEE + E+Y     NR L
Sbjct: 96  IDAVIQENTERVQELKGVVTTDRETIDDPNTSESRRQEAREGNEERLSEIYELERENREL 155


>SB_10565| Best HMM Match : DUF1279 (HMM E-Value=1.3)
          Length = 177

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 145 LQAVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLETDMNRNL 324
           + AV    T   + +   V  D E++    T+++ +  A+  NEE + E+Y     NR L
Sbjct: 7   IDAVIQENTERVQELKGVVTTDRETIDDPNTSESRRQEAREGNEERLSEIYELERENREL 66


>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1322

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
 Frame = +1

Query: 103  KCPARKVNIVRENYLQAVRMRRTIEEKRVNTSVD--RDLESVQSQ-ATNQNTQVH---AQ 264
            KCP RK    +     +VR R+T +  R  T++   R  ++V+++ A  +NT+ H     
Sbjct: 1245 KCPVRKARAEQSLPKLSVRRRKTHQRYRKTTTLQMTRGAQTVRTKGAITRNTKKHEGVGN 1304

Query: 265  STNEEVILEVYLET 306
            + ++E  + V L T
Sbjct: 1305 AADKEETVVVILRT 1318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,001,338
Number of Sequences: 59808
Number of extensions: 222643
Number of successful extensions: 632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)