Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b14
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)                 27   3.2  
SB_27281| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_28466| Best HMM Match : Drf_FH1 (HMM E-Value=2.1)                   26   7.5  
SB_30069| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)                26   9.9  

>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 152 KHVSPMLIMTILGFAYSSKLTTLNAVVDRIDRKPSPGLS 36
           +HVS  ++  +L + Y+SK  T  + VDRI R    G +
Sbjct: 140 EHVSSEVLGNLLRWRYNSKFLTTGSPVDRIPRYTQLGFT 178


>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
          Length = 683

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 43  PGEGLRSMRSTTAFRVVNFEL-YAKPNIVIMSIGLTCFGLALGY-IAYMRQKYESM 204
           PG+ L S  S   + +V F L Y  P IVIM       G  L Y IA++R  +  +
Sbjct: 187 PGDSLSSFPSYRTYHMVRFMLNYILP-IVIMIAAYGALGFRLKYHIAFIRTVHSEL 241


>SB_27281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -1

Query: 206 PIDSYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVVDRI-----DRKPSPG 42
           P++ + CR  A+Y +  P     +L+   L + + +  T    V+ ++     + KPSP 
Sbjct: 267 PLEEFLCRKAALYKKTPPSEDDCLLLALELLYVWRAFYTCSQPVLHKMLQDLRNSKPSPQ 326

Query: 41  L 39
           L
Sbjct: 327 L 327


>SB_28466| Best HMM Match : Drf_FH1 (HMM E-Value=2.1)
          Length = 331

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 40  KP-GEGLRSMRSTTAFRVVNFELYAKPNIVIMSIGLTCF 153
           KP GE  +   + +A  VV  E  +K NIV  + G TCF
Sbjct: 181 KPAGEVEQEETAKSADEVVPCESISKKNIVFRTTGTTCF 219


>SB_30069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 155 VWL*DTLHTCDKNMNQWDIILLLIKMEKRFLKRR 256
           V+  DT +TC++ +  W  + LL+  +    KRR
Sbjct: 50  VYTSDTFYTCERELGLWRALPLLVPNDHLPNKRR 83


>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
          Length = 594

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 11  CKQ--CQNHTMINLARVCDLCDQL 76
           CK   CQ+H    L  +CD CD+L
Sbjct: 150 CKSHYCQHHKEEKLILLCDTCDKL 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,929,799
Number of Sequences: 59808
Number of extensions: 187971
Number of successful extensions: 405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)