Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a12
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 48 8e-06
SB_35021| Best HMM Match : DUF334 (HMM E-Value=1.2) 34 0.11
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083) 29 4.2
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13) 28 7.3
SB_46765| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.89) 28 7.3
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_4307| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 47.6 bits (108), Expect = 8e-06
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Frame = +1
Query: 229 LSKYEHIFLFTINNMRNTKLKDLRNDWK-DSRFFFGKNKVMAIALGKTKSDEIEEQLNLL 405
L +Y +FL ++N+ + +++ +R + GKN ++ A+ E L L
Sbjct: 3 LDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHL--ENNPDLEKL 60
Query: 406 SKKLKGQCGLLMTNRDVPDVLNWFKSYQASEYARAGFIATKDVLLPKGPLADFSHTIEPH 585
+KG G + T D+ DV + + A+AG IA DV +P G
Sbjct: 61 LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGN-TGLGPEKTSF 119
Query: 586 LRRLGLPTSLEKGVI 630
+ L +PT + +G I
Sbjct: 120 FQALAIPTKIARGTI 134
>SB_35021| Best HMM Match : DUF334 (HMM E-Value=1.2)
Length = 371
Score = 33.9 bits (74), Expect = 0.11
Identities = 26/70 (37%), Positives = 36/70 (51%)
Frame = +1
Query: 142 KRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDWKDSR 321
+ D K +L NK + KQK IE N + + L TIN N K KD+ ND K +R
Sbjct: 101 ENDMKRALKTMNKCAKI-KQKDIE---NDMKRA----LMTINKCANIKQKDIENDIKKNR 152
Query: 322 FFFGKNKVMA 351
+ +N V+A
Sbjct: 153 YDRSRNLVIA 162
>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
Length = 1466
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 163 LTKTNKKGLVHKQKV-IEEIRNSLSKYEHIFLFTI 264
+TK KKGL + + E+R S+ K++H+F+ ++
Sbjct: 234 VTKCPKKGLTSELRTQSSEVRKSVFKFDHLFVLSL 268
>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
Length = 1072
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 142 LISAYLFY-YFIMEKTKFTI*LVLQFQKSRALDLL 41
+IS +LFY YF++E F L LQ + +LD++
Sbjct: 97 VISGFLFYRYFLLEDKTFVFFLSLQILQLISLDII 131
>SB_46765| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.89)
Length = 197
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 340 KVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRD-VPDVLN 471
KVM+I +GK K D+ +EQ++ ++ K + GL R+ V D+LN
Sbjct: 35 KVMSINIGKHKKDDKKEQVH--TEDDKKRKGLAQQKREKVVDLLN 77
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 248 MCSYLLSEFLISSMTFCLCTKPFLLVFVSDTFLSLFDFGIFVL 120
+C++ + +S CLC VFVS +L L IF L
Sbjct: 1918 LCAFCIFALSVSLRYLCLCAICIFAVFVSLRYLYLCGIRIFAL 1960
>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 467 STSGTSLFVISNPH*PFNFFDNRFSCSSISSLLVLPRAIAITLFFPK 327
S++GTS+ V PF+F + S SSL+VLP I I F K
Sbjct: 669 SSTGTSVHVG-----PFSFSMKQLSIGITSSLVVLPANIIIVTIFRK 710
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 584 CGSIVCEKSARGPLGNKTSFVAMKPAL 504
CGSI C+KS++ L + SFVA K L
Sbjct: 1561 CGSI-CKKSSKAMLSGEQSFVAGKDRL 1586
>SB_4307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 136 KSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMR 276
K+K+D ++ KT K+ L K+ + E+R L+K E + T+ N+R
Sbjct: 2 KTKQDNEI---KTLKERLASKELELIELREKLTKSEEEKMATLVNIR 45
>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 27.5 bits (58), Expect = 9.7
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Frame = -1
Query: 416 NFFDNRFSCSSISSLLVLPRAIAITLFFPKKNLESFQSFRRSFNFVFLMLLMVN---KNM 246
N+F NR + S ++LP I + + + R++ NFV LL KN
Sbjct: 137 NYFVNRIQTINFSICVILPAGIMLVCLAAAFRVTKVAA-RQTRNFVVFYLLTRARHLKNC 195
Query: 245 CSYLLSEFLISSMTFCLCTKPFLLV--FVSDTFLSLFDFGIFV 123
S+ + ++ + + P L V +++D +L FG F+
Sbjct: 196 TSFSILNLCVADLLITVTCIPLLTVDLYIADEWL----FGAFM 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,229
Number of Sequences: 59808
Number of extensions: 354253
Number of successful extensions: 987
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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