Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d20
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06)               29   3.0  

>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = -3

Query: 369 LKLHKSQTCFN-KNRTHERHAQKRGKGAARDRFYSFSAGSRS-GVARIR*QYRFKEILTN 196
           L+  +S+T  + ++R+ +R   +RGK  +R R  S+S+ SRS   +R R + R +    +
Sbjct: 635 LRRSRSRTSLSSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRSRSRSRDRGRGRKRSRRRS 694

Query: 195 KICS*SICSLFRRCHPTSVRGR 130
           +  S S  SL R    +  RGR
Sbjct: 695 RSSSHSSSSLSRSRSRSRSRGR 716


>SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06)
          Length = 631

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = -1

Query: 365 NYTSPKHVLTRTAHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNNIDSKKY 204
           ++T+P++V++  +  +   ++  +   GIV+++  L  G  L  FGN    KK+
Sbjct: 32  SFTNPEYVISEGSRASLDIRRTGETN-GIVYVLCKLVNGTTLDDFGNKEVIKKF 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,542,558
Number of Sequences: 59808
Number of extensions: 420802
Number of successful extensions: 1027
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)