Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d12
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36362| Best HMM Match : Asp (HMM E-Value=0)                        178   3e-45
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)                    46   2e-05
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.87 
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             29   4.6  
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)                 28   6.1  
SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)                      28   6.1  

>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score =  178 bits (434), Expect = 3e-45
 Identities = 87/130 (66%), Positives = 99/130 (76%), Gaps = 3/130 (2%)
 Frame = +1

Query: 301 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTPPQSFKVVF 471
           M T R    EVG  +E L  KY      G  PEPL NY+DAQYYG I+IGTPPQ F VVF
Sbjct: 1   MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTPPQKFTVVF 60

Query: 472 DTGSSNLWVPSKKCHYTNIACLLHNKYDSRKSTSYVANGTQFAIQYGSGSLSGFLSTDDV 651
           DTGSSNLWVPSKKC +TNIACLLH+KYDS KS++Y  NGT+FAI+YGSGSLSGFLS D V
Sbjct: 61  DTGSSNLWVPSKKCSWTNIACLLHDKYDSTKSSTYKKNGTEFAIRYGSGSLSGFLSIDTV 120

Query: 652 TVGGLKVRRQ 681
           +VGG+ V+ Q
Sbjct: 121 SVGGIDVKGQ 130


>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
          Length = 278

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 36/106 (33%), Positives = 48/106 (45%)
 Frame = +1

Query: 328 EVGTELELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSK 507
           + G ++ LLR K D    + E L       YY   ++G+PPQ   V+ DTGSSN  V + 
Sbjct: 11  KTGIKIPLLRTKRD-NNVAMENLKGRPGQGYYIASNLGSPPQRINVLVDTGSSNFAVAAS 69

Query: 508 KCHYTNIACLLHNKYDSRKSTSYVANGTQFAIQYGSGSLSGFLSTD 645
              Y  I    H      KSTSY       ++ Y  GS  G L +D
Sbjct: 70  AHPY--IPYYFH----IDKSTSYKDLNKPVSVPYTQGSWEGELGSD 109


>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 289 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 405
           PL   ++ R H  ++ T LEL+  K   + PS +PL++Y
Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 277 LYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 393
           ++ V L  +K +  ++++ GT+L + +LK   T P P P
Sbjct: 244 IHDVLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282


>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
          Length = 1510

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 671  TLSPPTVTSS-VERKPERLPEPYCIANW 591
            T SPP V S+ V R P R P+P    NW
Sbjct: 1232 TESPPDVASTPVRRYPRRTPKPVRRVNW 1259


>SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)
          Length = 340

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 671 TLSPPTVTSS-VERKPERLPEPYCIANW 591
           T SPP V S+ V R P R P+P    NW
Sbjct: 166 TESPPDVASTPVRRYPRRTPKPVRRVNW 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,539,371
Number of Sequences: 59808
Number of extensions: 428797
Number of successful extensions: 922
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)