Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c17
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)                 113   2e-25
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               92   4e-19
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          51   9e-07
SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_41537| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  

>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
          Length = 238

 Score =  113 bits (271), Expect = 2e-25
 Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
 Frame = +1

Query: 214 MSEKHLQTGDVLPPYSGKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPEW-IF 390
           M + HL  GD  PP   KLR+++MRFCPYAER  L L AK + Y+ + INL  KP+W + 
Sbjct: 1   MPQSHLSNGDPRPPPGDKLRLYSMRFCPYAERPRLVLAAKGVDYECININLKNKPDWYLA 60

Query: 391 NFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQ 570
             +P+G VP +E   G+ L +S +   YLDE +P+ P+  SD   + + ++L++ F    
Sbjct: 61  EPNPRGLVPMIEMPDGRLLPESLLCCEYLDELFPQNPMYPSDAFEKNRQRLLIDRFGKVT 120

Query: 571 SAYYTAA---FNAQALEPSMVETYHKGLEGLQKELETRS 678
           S++Y       +  AL+    ET +K L   + EL+ ++
Sbjct: 121 SSFYQMLMRDMDEDALK-GQTETLNKELSLYENELKNKT 158


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
 Frame = +1

Query: 205 SFNMSEKHLQTGDVLPPY-SGKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPE 381
           S  M   H+  G   P     KLR+++MRFCP+AER  L L AK + Y+ V +NL  KPE
Sbjct: 8   SITMPVTHISKGSSRPAKPQNKLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNLKSKPE 67

Query: 382 WIFNFSP--KGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVES 555
           W F   P  +G VP LE   GK + +S II  +L++ Y +IPL   DP  +++ K+L + 
Sbjct: 68  W-FQTHPDCEGKVPTLETMDGKLIPESVIICEFLEDYYRKIPLYPCDPYAKSRQKLLAQR 126

Query: 556 F 558
           F
Sbjct: 127 F 127


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
 Frame = +1

Query: 289 FCPYAERTVLTLNAKNIPYDLVFIN-LDQKPEWIFNFSPKGTVPALEYEPGKALFDSNII 465
           FCP+A+R  + + AK   ++ +  N  ++ PEW+   +P G VP + +  G A+++S+I 
Sbjct: 269 FCPFAQRAWIAMLAKKAEFEYIEQNPYNKTPEWL-AINPNGLVPVIVHN-GNAVYESSIC 326

Query: 466 NVYLDEKY-PEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAFNAQALEPSMVETYHKG 642
             ++DE +   + +   DP +RA  ++  +             F ++ L P     Y   
Sbjct: 327 IEFIDEAFSTPVTILPKDPYKRAHGRMWGD-------------FVSKKLVPHF---YTML 370

Query: 643 LEGLQKELETRSTKYLHGGRAWVG*LHPFGHF 738
           L+  +++ E   TKYL G R +   + P G F
Sbjct: 371 LKQDKEDQEEAKTKYLEGLRTFTNEMDPEGPF 402


>SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 28/74 (37%), Positives = 34/74 (45%)
 Frame = +2

Query: 401 RRVLCQLWNMNLVRHSLTATL*MFILMKSIQRFLCKHQTLCAELKTKFSLRALLQHNQLT 580
           R+VLC LW  N V HS  A      + K + RF C    L  EL+    L AL Q N ++
Sbjct: 748 RKVLCALWQGNCVSHSPEAL--FSTVWKVVPRFRC----LVEELRK--VLCALWQGNCVS 799

Query: 581 IQQHSMHKLSSQAW 622
              HS   L S  W
Sbjct: 800 ---HSPEALFSTVW 810


>SB_41537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = +2

Query: 506 KHQTLCAELKTKFSLRALLQHNQLTIQQHSMHKLSSQAW*RHTTKDLRDYKKSLKRAV 679
           KH  L  +LKT F L  +L H Q TI   S+     ++W +  TK  RD+   L RA+
Sbjct: 18  KHGILHEDLKTGFMLYDVLAHGQNTILPSSLWIHERESWLQ--TK--RDFSTGLARAL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,544,680
Number of Sequences: 59808
Number of extensions: 413584
Number of successful extensions: 923
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)