Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c12
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.0  
SB_8290| Best HMM Match : WD40 (HMM E-Value=2)                         27   3.0  
SB_28625| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          27   5.3  
SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 26   7.0  
SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)                  26   7.0  
SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)                  26   7.0  
SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)                   26   9.2  
SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)                26   9.2  
SB_4710| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.78)           26   9.2  

>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1227

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 283 VIILLLVAVMLDVDQHPGWDSRPAHHHQAGEEDH--LTSGNLVSWRSADNAHVPLLS 119
           +++++ V + L  D    + +R    H AGE DH   +S  L S RSA++   P L+
Sbjct: 234 LLVIVGVILYLGTDYLTSYQTRQQELHGAGEYDHESESSYTLTSKRSANHDTTPGLA 290


>SB_8290| Best HMM Match : WD40 (HMM E-Value=2)
          Length = 233

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 SVICTPPRNKVSRGEMIFLAGLMVV-GWSAIPAWVLVNIKH 256
           +V    P  K  R E  F   L+V  GWSA+ AWV  ++ H
Sbjct: 79  AVTANLPYPKTIRPE--FRVSLLVTSGWSAVTAWVKSSVTH 117


>SB_28625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 203 MVVGWSAIPAWVLVNIKHYRDKQ*NYHKKICSLFCSK*NVNLNQKK 340
           MV  ++A+ + V+ + K + D      KKI  L+CS+  V L  +K
Sbjct: 380 MVTVFTAVSSVVVTSAKEFADTAKQLCKKIRVLYCSEDQVGLVTEK 425


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 219  DQPTTIRPARKIIS--PLETLFLGGVQITLM 133
            DQ T++  +  IIS  P ET   GGV+ITL+
Sbjct: 1426 DQATSVTSSANIISVTPTETGINGGVRITLV 1456


>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 107 FKNVAQQRNMSVICTPPRNKVSRGEMIFLAGL 202
           +  V + R MS++  P   ++ RG  +  AGL
Sbjct: 338 YSTVTRGRRMSIVVQPSTRRMRRGSSVAAAGL 369


>SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)
          Length = 420

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 158 RNKVSRGEMIFLAGLMVVGWSAIPAWVLVNIKH 256
           RNK  +GE+     L+V  WS +P     N KH
Sbjct: 213 RNKKRQGEICNACVLLVKRWSKLPPGTEKNWKH 245


>SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)
          Length = 878

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 222 LSQPGCWSTSSITATSNKIITKKYVVYSVLS 314
           LS+PGCWS   +   S +   +  +V  VLS
Sbjct: 539 LSEPGCWSEGRVLEQSVESKAEAKLVRQVLS 569


>SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)
          Length = 155

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 103 NL*ECRSTKEHERYLHSAKKQGFQR*DDLPRRPDGGGLVCYPSLGVGQHQALPR 264
           +L EC+S  ++E++  S +     R   LPR        C+P    G    L R
Sbjct: 42  SLKECKSQFQNEKWNCSVRFASSNRMPGLPRLAPSAAHYCHPDASKGSTGVLGR 95


>SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)
          Length = 529

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 133 VPLLSDILKDLVVSAK*IPNSKHFVLVQLFFE 38
           VP+ SD+L+DLV  A  I N++   L ++  E
Sbjct: 321 VPIHSDMLRDLVCKAFCISNTRQLYLEKIVKE 352


>SB_4710| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.78)
          Length = 158

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 223 YPSLGVGQHQALPRQAIKLSQ 285
           YP+ G+G H+ L   A+KL+Q
Sbjct: 19  YPAKGIGVHRDLSDGAVKLNQ 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,887,135
Number of Sequences: 59808
Number of extensions: 184791
Number of successful extensions: 856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)