Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c10
(690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 1e-22
SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 33 0.29
SB_31700| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=6.8) 32 0.50
SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_33366| Best HMM Match : 7tm_1 (HMM E-Value=2.29813e-43) 30 1.5
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40) 30 2.0
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 30 2.0
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 30 2.0
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 4.7
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 29 4.7
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 28 6.2
SB_25279| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_565| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8) 28 6.2
SB_27497| Best HMM Match : Death (HMM E-Value=0.028) 28 8.2
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 28 8.2
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1) 28 8.2
SB_42507| Best HMM Match : ResIII (HMM E-Value=0.75) 28 8.2
SB_37401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 103 bits (247), Expect = 1e-22
Identities = 47/75 (62%), Positives = 63/75 (84%)
Frame = +3
Query: 333 VTTPSFPDSVSEGDVKLDKKVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGE 512
V TP F +SV+EGD++ D+ VGD+VA DEVV EIETDKT+IPV AP +GVI+EL+V DG+
Sbjct: 50 VNTPPFAESVTEGDIRWDQAVGDAVAEDEVVGEIETDKTSIPVTAPANGVIEELFVADGD 109
Query: 513 TVKAGQKLFRLEITG 557
V+ GQ+LF+L++TG
Sbjct: 110 KVEKGQQLFKLKLTG 124
>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 333 VTTPSFPDSVSEGD-VKLDKKVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDG 509
V P+ ++ G V +K+ GD +A +++ +IETDK + P G I ++ + G
Sbjct: 72 VPLPALSPTMEAGTLVSWEKQEGDELAEGDLLAQIETDKATMEFETPEEGFIAKILIPAG 131
>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 382
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 387 KKVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGETVKA 524
KK GD++ + + EIETDK + + GV+ ++ + G + +A
Sbjct: 11 KKEGDTIEPGDALCEIETDKATLTLDTDEQGVLAKIVIPPGTSDEA 56
>SB_31700| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=6.8)
Length = 126
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 409 PPMKWSWKSRRTKPPFRSWR 468
PP +WS S T PPF SWR
Sbjct: 47 PPPRWSSNSPYTHPPFASWR 66
>SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 31.1 bits (67), Expect = 0.88
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 119 RSISENATTLLEAHPDA-VPASGPVHPLQVNNSNA--QNTCTLTRNQTEPTESSG 274
R I + TLL +HPD +P +G +P S A + C LT++ T SG
Sbjct: 83 RHIQSSVDTLLTSHPDCLIPVTGDFNPTSTRLSAATIRRKCGLTQSIKVLTRDSG 137
>SB_33366| Best HMM Match : 7tm_1 (HMM E-Value=2.29813e-43)
Length = 364
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 179 SGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSS 292
SG L+V +S+ NT T+T+ Q+E S RP +S
Sbjct: 5 SGSPSSLEVISSDGNNTNTITQGQSENDTGSSRPGGTS 42
>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
Length = 580
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -3
Query: 556 PVISNL-NSFCPALTVSP--SLTYNSLMTPWPGAMTGMAVLSVSISRTTSSAATLSPTFL 386
PVI++L + A+ SP LT LM G M + LSVS R SSA T
Sbjct: 324 PVITSLARTHANAVLDSPVMDLTARILMNAVEGPMVAIETLSVSTHRVRSSAGVKMVTLK 383
Query: 385 SNLTSPSET 359
++ T+ S +
Sbjct: 384 TDQTASSSS 392
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = -3
Query: 604 VSTFGASVAAAFLGASP----VISNLN-SFCPALTVSPSLTYNSLMTPWPGAMTGMAVLS 440
V F ++ + F +P V+ +++ S P +T++ + NS M ++
Sbjct: 456 VGNFTSATSVVFDSTTPNATRVVPSISASISPNVTINMTREANSTMILPSTSVPYNTTFI 515
Query: 439 VSISRTTSSAATLSPTFLSNLTS 371
S + T+++A T+SP+++SN+T+
Sbjct: 516 PSPNATSTAATTMSPSYVSNMTT 538
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = -3
Query: 604 VSTFGASVAAAFLGASPVISNL-----NSFCPALTVSPSLTYNSLMTPWPGAMTGMAVLS 440
V F ++ + F +P + L S P +T+ + NS M ++ L
Sbjct: 858 VGNFTSATSVVFDSTTPNATRLVPSISASISPNVTIDMTREANSTMILPSTSVPYNTTLI 917
Query: 439 VSISRTTSSAATLSPTFLSNLTS 371
+ T+++A T+SPT+++N+T+
Sbjct: 918 PGPNATSTAATTMSPTYVANMTT 940
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = -3
Query: 604 VSTFGASVAAAFLGASPVISNL-----NSFCPALTVSPSLTYNSLMTPWPGAMTGMAVLS 440
V F ++ + F +P + L S P +T+ + NS M ++ L
Sbjct: 1461 VGNFTSATSVVFDSTTPNATRLVPSISASISPNVTIDMTREANSTMILPSTSVPYNTTLI 1520
Query: 439 VSISRTTSSAATLSPTFLSNLTSPSETES 353
+ T+++A T+SP++++N+T+ T S
Sbjct: 1521 PGPNATSTAATTMSPSYVANMTTLDSTVS 1549
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/61 (26%), Positives = 35/61 (57%)
Frame = -3
Query: 553 VISNLNSFCPALTVSPSLTYNSLMTPWPGAMTGMAVLSVSISRTTSSAATLSPTFLSNLT 374
V S+ S P +T++ + NS M ++ L + + T+++A T+SP++++N+T
Sbjct: 76 VPSSSASISPNVTINMTREANSTMILPSTSVPYNTTLIPAPNATSTAATTMSPSYVANMT 135
Query: 373 S 371
+
Sbjct: 136 T 136
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = -3
Query: 562 ASPVISNLN-SFCPALTVSPSLTYNSLMTPWPGAMTGMAVLSVSISRTTSSAAT-LSPTF 389
A+ V+ +++ S P +T++ + NS M P + + TS+AAT +SP++
Sbjct: 1680 ATRVVPSISASISPNVTINMTREANSTMI-LPSTSVPYNTMFIPAPNATSTAATTMSPSY 1738
Query: 388 LSNLTS 371
++N+T+
Sbjct: 1739 VANMTT 1744
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/55 (25%), Positives = 32/55 (58%)
Frame = -3
Query: 535 SFCPALTVSPSLTYNSLMTPWPGAMTGMAVLSVSISRTTSSAATLSPTFLSNLTS 371
S P +T++ + NS M ++ L + + T+++A T+SP++++N+T+
Sbjct: 283 SISPNVTINMTRKANSTMILPSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTT 337
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = -3
Query: 604 VSTFGASVAAAFLGASPVISNL-----NSFCPALTVSPSLTYNSLMTPWPGAMTGMAVLS 440
V F ++ + F +P + L S P +T++ + NS M ++ L
Sbjct: 1260 VGNFTSATSVVFDSTTPNATRLVPSISASISPNVTINMTREANSTMILPSTSVPYNTTLI 1319
Query: 439 VSISRTTSSAATLSPTFLSNLTS 371
+ T+++A T+SP++++N+T+
Sbjct: 1320 PGPNATSTAATTMSPSYVANMTT 1342
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/63 (26%), Positives = 36/63 (57%)
Frame = -3
Query: 559 SPVISNLNSFCPALTVSPSLTYNSLMTPWPGAMTGMAVLSVSISRTTSSAATLSPTFLSN 380
+PV S S P +T++ + NS M ++ L + + T+++A T+SP++++N
Sbjct: 258 TPVPSISASISPNVTINMTRGANSTMILPSTSVPYNTTLIPAPNATSTAATTMSPSYVAN 317
Query: 379 LTS 371
+T+
Sbjct: 318 MTT 320
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = -3
Query: 517 TVSPSLTYNSLMTPWPGAMTGMAVLSVSISRTTSSAATLSPTFLSNLTSPSETESGKLGV 338
T S S + + +TP P + ++++ ++ TS+ + + + N T+P + S +
Sbjct: 210 TTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTPVPSISASISP 269
Query: 337 VTSCSTSRG 311
+ + +RG
Sbjct: 270 NVTINMTRG 278
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/55 (25%), Positives = 32/55 (58%)
Frame = -3
Query: 535 SFCPALTVSPSLTYNSLMTPWPGAMTGMAVLSVSISRTTSSAATLSPTFLSNLTS 371
S P +T++ + NS M ++ L + + T+++A T+SP++++N+T+
Sbjct: 394 SISPNVTINMTRKANSTMILHSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTT 448
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = -3
Query: 604 VSTFGASVAAAFLGASPVISNL-----NSFCPALTVSPSLTYNSLMTPWPGAMTGMAVLS 440
V F ++ + F +P + L S P +T++ + NS M ++ L
Sbjct: 165 VGNFTSATSVVFDSTTPNATRLVPSISASISPNVTINMTREANSTMILPSTSVPYNTTLI 224
Query: 439 VSISRTTSSAATLSPTFLSNLTS 371
+ T+++A T+SP++++N+T+
Sbjct: 225 PGPNATSTAATTMSPSYVANMTT 247
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/65 (23%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = -3
Query: 562 ASPVISNLN-SFCPALTVSPSLTYNSLMTPWPGAMTGMAVLSVSISRTTSSAATLSPTFL 386
A+ ++ +++ S P +T++ + NS M ++ L + + T+++A T+SP+++
Sbjct: 585 ATTLVQSISASISPNVTINMTREANSTMIFPSTSVPYNTTLIPAPNATSTAATTMSPSYV 644
Query: 385 SNLTS 371
+N+T+
Sbjct: 645 ANMTT 649
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 402 SVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGETVKAGQKLFRLEIT 554
SV A L+ ++ + + GVIK+LY + + K GQ L +E++
Sbjct: 13 SVTASHGTLDRRRYAASVTITSRFDGVIKKLYYEVDDIAKVGQPLVDIELS 63
>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +3
Query: 183 GQSIRFKSTTQTPKILAPLHATKLNQPRALVAHNQVASIHFTNPLLVEQDVTTPSFP--- 353
G+ + F + I L TKLN + + + ++H N + V +D+ P
Sbjct: 268 GKEVTFATKDDIKLIPKELGETKLNPQSFTLEDDDLPTVHLDNVVFVTEDLEESRKPLSN 327
Query: 354 DSVSEGDVKLDKKVGDSVAADEVVLEIETD 443
D ++ V + G++ A +++ +++ D
Sbjct: 328 DDQADKSVAVGSSGGNAAANNDLCEDLKKD 357
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = -3
Query: 604 VSTFGASVAAAFLGASPVISNL-----NSFCPALTVSPSLTYNSLMTPWPGAMTGMAVLS 440
V F ++ + F +P + L S P +T++ + NS M ++ L
Sbjct: 255 VGNFTSATSVVFDSTTPNATTLVPSITASISPNVTINMTREANSTMILPSTSVPYNTTLI 314
Query: 439 VSISRTTSSAATLSPTFLSNLTS 371
+ + T+++A T+SP++++N+T+
Sbjct: 315 PAPNATSTAATTMSPSYVANMTT 337
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = -3
Query: 604 VSTFGASVAAAFLGASPVISNL-----NSFCPALTVSPSLTYNSLMTPWPGAMTGMAVLS 440
V F ++ + F +P + L S P +T++ + NS M ++ L
Sbjct: 456 VGNFTSATSVVFDSTTPNATTLVPSISASISPNVTINMTREANSTMILPSTSVPYNTTLI 515
Query: 439 VSISRTTSSAATLSPTFLSNLTS 371
+ + T+++A T+SP++++N+T+
Sbjct: 516 PAPNATSTAATTMSPSYVANMTT 538
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = -3
Query: 604 VSTFGASVAAAFLGASPVISNL-----NSFCPALTVSPSLTYNSLMTPWPGAMTGMAVLS 440
V F ++ + F +P + L S P +T++ + NS M ++ L
Sbjct: 657 VGNFTSATSVVFDSTTPNATTLVPSISASISPNVTINMTREANSTMILPSTSVPYNTTLI 716
Query: 439 VSISRTTSSAATLSPTFLSNLTS 371
+ + T+++A T+SP++++N+T+
Sbjct: 717 PAPNATSTAATTMSPSYVANMTT 739
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 412 PMKWSWKSRRTKPPFRSWRPAMVSSRSCTSKTEKPLKLDK 531
P + S K++ +KP + + A SC +KT KP DK
Sbjct: 1000 PRQASCKTKASKPQDQGKQAARPRQASCKTKTSKPQDQDK 1039
>SB_25279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 412 PMKWSWKSRRTKPPFRSWRPAMVSSRSCTSKTEKPLKLDK 531
P + S K++ +KP + + A SC +KT KP DK
Sbjct: 133 PRQASRKTKTSKPQDQDKQAAKPKQASCKTKTSKPKDQDK 172
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = -3
Query: 589 ASVAAAFLGASPVIS-NLNSFCPALTVSPSLTYNSLMTPWPGAMTGMAVLSVSISRTTSS 413
AS ++A + +S +S + +S + ++ S +S T A + +A + + S + SS
Sbjct: 44 ASASSASMSSSSSLSASASSNIASSDIASSANASSAKTSSASASSNIASSASASSASMSS 103
Query: 412 AATLSPTFLSNLTSPSETESGKLGVVTSCSTS 317
A++LS + SN+ S S + S S
Sbjct: 104 ASSLSASASSNIASSDIASSANASSAKTSSAS 135
>SB_565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 538 NSFCPALTVSPSLTYNSLMTPWPGA 464
N F P P+ Y +TPWPG+
Sbjct: 9 NPFSPXXXXCPAPCYGPALTPWPGS 33
>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
Length = 622
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -3
Query: 526 PALTVSPSLTYNSLMTPWPGAM----TGMAVLSVSISRTTSSAATLSPTFLSNLTSPS 365
P + S S++YN+ +TP P A T ++ SV T S+ L+ + LS PS
Sbjct: 333 PMILSSTSVSYNTTLTPAPDAASTAPTAISPSSVGNMTTLVSSVNLTRSSLSTTLIPS 390
>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
Length = 892
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 508 PSLT-YNSLMTPWPGAMTGMAVLSVSISRTTSSA-ATLSPTFLSNLTSPSE 362
P +T +N MTP +TG++ SVS+S TT ++S L +L S E
Sbjct: 179 PVITEFNHGMTPGKHVITGLSGQSVSLSATTDDVNLSISTPQLPDLESTKE 229
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = -3
Query: 517 TVSPSLTYNSLMTPWPGAMT---GMAVLSVSISRTTSSAATLSPTFLSNLTSP--SETES 353
T SPS Y M+P+ G +T G ++ + T+ A+ LS S TS SET
Sbjct: 385 TTSPSWDYRPDMSPFHGTLTSPSGNVYVATTDEFTSGHASGLSSAASSGFTSAPGSETSD 444
Query: 352 G 350
G
Sbjct: 445 G 445
>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 715
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 454 MAVLSVSISRTTSSAATLSPTFLSNLT-SPSETESGKLGVVTSCST 320
+A+ ++ +S+TT + LSP + N++ S TE G+ SC T
Sbjct: 387 IALTTLCVSKTTYNLTDLSPFHMYNISISAFTTEYGEFSQPVSCLT 432
>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
Length = 461
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 143 TLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQS 286
T + +HP A + P H QV ++ TLTR ++P G +S
Sbjct: 210 TRVPSHPCATHGTTPSHGYQVTHALYARYDTLTRVSSQPWSRQGTKRS 257
>SB_42507| Best HMM Match : ResIII (HMM E-Value=0.75)
Length = 1056
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 418 KWSWKSRRTKPPFRSWRPAMVSSRSCTSK 504
KW+ + + PF+ WR A V S+ S+
Sbjct: 392 KWTQRENMRQTPFKYWRAAQVESKVWNSR 420
>SB_37401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = +2
Query: 173 PASGPVHPLQVNNSNAQNTCTLTR-----NQTEPTESSGRPQSSSIHPLHE-SPACRARC 334
P + PL+ + N++N C R + P + RP +I PL E SP C
Sbjct: 32 PTQRTIAPLREQSPNSENNCPTQRTIAPLREQLPHSENNRPTQRTIAPLREQSPHSENNC 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,293,809
Number of Sequences: 59808
Number of extensions: 416361
Number of successful extensions: 1851
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1845
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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