Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c03
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             167   6e-42
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            30   0.98 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.3  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      28   4.0  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   5.3  
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)                 27   6.9  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 27   6.9  
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  167 bits (405), Expect = 6e-42
 Identities = 79/95 (83%), Positives = 88/95 (92%), Gaps = 2/95 (2%)
 Frame = +3

Query: 198 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 371
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 372 HKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 476
           HKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +2

Query: 167 YSPHQDHSYFSQCALTR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 316
           Y P   +SY + CA T+   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 197 SQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 316
           S C     GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 132 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 233
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -1

Query: 497 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHNFRGRV*VDHSLVDSHLK 357
           FY  L L V D    L  G+D    DLF   R    VD+SLV   +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 272  GPSPHANQDPAYHHP 316
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
          Length = 198

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 110 GSRCSVRQRHRETPGRGLPYSPHQDHSYFSQCALTREGL 226
           GSR   R RHR  PGR  P  P    S+ ++ A  R GL
Sbjct: 2   GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 71  KSCLSRPEFNKQHGSRCS-VRQRHRETPGRGLPYSPHQ 181
           +S ++   +  +H S  S V+ R+R   G+G+ Y PHQ
Sbjct: 744 RSQINVTRYRPRHPSSTSTVKYRYRLWTGKGVDYQPHQ 781


>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 504 KNILLAALPTRRRWSPQP 451
           +N+++  LPT +RW P P
Sbjct: 180 RNVVIQRLPTSQRWQPYP 197


>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 282 RMPTKILRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 410
           R+PT    + T +K PC     TW R +    KR + +H P+ +
Sbjct: 22  RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 99  TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 221
           T N A+ ++S   + +PQA + P+H   I + SRN  ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
 Frame = +3

Query: 126 SGKDIEKPQAEVSPIHRIRITLTSR-NVRSLEKVCADLINGAKKQKLRVKGPVRMPTKIL 302
           S +  +K   +VSP+ RI+   TSR ++ S      DL +   K K   K P+  P    
Sbjct: 124 STRSSKKDPDKVSPLSRIKSPATSRVSLDSDSDDGNDLPSVFTKTKPVWKPPITTPQVNS 183

Query: 303 RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSIN 434
                  P    + + D  ++R HKR+ D +S      ++ S N
Sbjct: 184 DSEEEDLPSYLSTNSQDT-KIRTHKRIADNNSKISCRSKVDSQN 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,492
Number of Sequences: 59808
Number of extensions: 356842
Number of successful extensions: 755
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)