Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c01
         (254 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10120| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.79 
SB_37103| Best HMM Match : DUF164 (HMM E-Value=0.26)                   25   7.4  
SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  

>SB_10120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 223 NPDKKGIPHKDKFEIFKHKEVKGIYKDK 140
           NP+K+   HK  FE+F  KE K  Y+DK
Sbjct: 181 NPEKEDKSHKPLFELF--KEYKDKYEDK 206


>SB_37103| Best HMM Match : DUF164 (HMM E-Value=0.26)
          Length = 387

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 207 EYHTKISLKYLNTKKLKE 154
           EYHTK+ + Y + K+LK+
Sbjct: 252 EYHTKLKIAYGDIKELKQ 269


>SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 145 LYIFL*LLCV*IFQTYLCVVFLFYL 219
           L++ L  + +    T++CVVF++YL
Sbjct: 244 LFMILSFIVINNLSTFVCVVFIYYL 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,351,473
Number of Sequences: 59808
Number of extensions: 45052
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 16,821,457
effective HSP length: 61
effective length of database: 13,173,169
effective search space used: 302982887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)