Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b20
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             219   8e-58
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)                  28   5.0  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   5.0  
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)                  27   6.6  
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)                27   8.8  
SB_50021| Best HMM Match : rve (HMM E-Value=0.043)                     27   8.8  
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)                   27   8.8  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  219 bits (536), Expect = 8e-58
 Identities = 100/132 (75%), Positives = 117/132 (88%)
 Frame = +1

Query: 76  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 255
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 256 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 435
           KKTR ++P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VT
Sbjct: 62  KKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVT 121

Query: 436 NAAARLRSQENE 471
           N+ ARLRS+ENE
Sbjct: 122 NSNARLRSEENE 133


>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = -2

Query: 270 MTGLLVGTVTNV--GHQV--LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFD 103
           M G  + T+T++   H+V  L +EP A  ++ T++FTP  + F+ A  +     +RP   
Sbjct: 498 MYGTKLDTITDIIENHKVAILDVEPQALKILRTAKFTPY-VVFISAPSIKGINDIRPPVA 556

Query: 102 DCRPVNRSYSHLVCFFKKRD 43
           +  P   +   L    K+ D
Sbjct: 557 NHEPAEDAGESLKRLAKESD 576


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = +1

Query: 61  TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 240
           +YK++ +P  +P  +     + +   SD+ DK+K    K +    RV    KG+     +
Sbjct: 14  SYKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKV 71

Query: 241 GYGSNKKTRHMLPNGFRKV 297
           G  S K  R +L   F ++
Sbjct: 72  GRLSAKPERDVLMQDFAQI 90


>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 119 RDLSGINRIAMTNLRGIGVNLEVLTTESAGGS 214
           +DL  I   A T+LR +G+N+E+L+   AGGS
Sbjct: 169 KDLMAIVFFA-TDLREVGINIELLSMLPAGGS 199


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 10  FSCGRVTAWFTVAFLK 57
           FSCG V A+FTVAF K
Sbjct: 581 FSCGSVVAFFTVAFSK 596


>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
          Length = 291

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 256 KKTRHMLPN-GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 432
           K+ +H+L N  F  VLV +++E E    Q ++   EIA  + ++  +L  E ++ L  + 
Sbjct: 93  KQEKHLLYNLEFSPVLVLDLEESEKSAKQEKESDEEIARRLQAEIERLREEGSRLLQEQQ 152

Query: 433 TNAAARLRSQENE 471
               A++R +E +
Sbjct: 153 ELLKAQIREEEQK 165


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 429 SDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHH 331
           S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
          Length = 550

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 198 SPQAVQGSILDAQHWLRFQQE 260
           SP+A+QG ++ AQ W   +QE
Sbjct: 151 SPEAIQGFLVSAQEWAIHRQE 171


>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
          Length = 784

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 456 AEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHHQD 325
           AEA+   R   +ELL S  ++LP +RR  +        +  H D
Sbjct: 247 AEATNDFRQELSELLASARERLPFMRRSLLEIEATAQEIPTHVD 290


>SB_50021| Best HMM Match : rve (HMM E-Value=0.043)
          Length = 662

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 129 DKSLRPLFDDCRPVNRSYSHLVCFFKKRDSEPRGDTAAREG 7
           D++L  + D C       +H  CF KK++ +  G    +EG
Sbjct: 90  DENLHGMIDRCIKTGLKLNHEKCFIKKQEIKFFGVICGKEG 130


>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
          Length = 124

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 397 SASASSKRHHERSLRSTSCFASSRFPAL*HCEL 299
           S   + +R  +RS + ++C AS R P+   CEL
Sbjct: 21  STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,710,476
Number of Sequences: 59808
Number of extensions: 296123
Number of successful extensions: 1114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)