Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b16
(1063 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 150 2e-36
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07) 72 9e-13
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 2e-06
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0) 35 0.097
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 34 0.22
SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2) 31 1.2
SB_12293| Best HMM Match : OATP (HMM E-Value=0) 29 4.8
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 150 bits (364), Expect = 2e-36
Identities = 67/126 (53%), Positives = 89/126 (70%)
Frame = +3
Query: 81 RPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGN 260
+P KI+G + L G HGFH+H YGD +NGC SAG HFNP ++HG P E RHVGDLGN
Sbjct: 26 KPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGN 85
Query: 261 IKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLG 440
+ + G + I+M D +++L G H+++GRS+VVH D+DDLG H SKTTG++ GRL
Sbjct: 86 VVA-GDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLA 144
Query: 441 CGIIAI 458
CG+I I
Sbjct: 145 CGVIGI 150
>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
Length = 100
Score = 71.7 bits (168), Expect = 9e-13
Identities = 37/72 (51%), Positives = 47/72 (65%)
Frame = +3
Query: 240 HVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTG 419
HVGDLGNI + N D + ++ +IIGR++VVH D+DDLG H LSK+TG
Sbjct: 1 HVGDLGNIIA-NQNGRATFRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56
Query: 420 NSDGRLGCGIIA 455
NS R+GCGIIA
Sbjct: 57 NSGARVGCGIIA 68
>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 50.8 bits (116), Expect = 2e-06
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +3
Query: 213 HGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 359
HGAP+ + RH+GDLGNI++ N + ++++ D ++SL G +IIGRSLV
Sbjct: 2 HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49
>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1358
Score = 35.1 bits (77), Expect = 0.097
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 459 CK*CHR-FNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRD 635
C C + F +L + K D+ +K+N+ +D+ +K+N L++ K
Sbjct: 1130 CDQCQQGFYNLTTTGCSAKVNVSHDMTLVAKVNVSHDMTLVAKVNVLHDMTLVAKVNVSH 1189
Query: 636 DVICFSKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDV 749
D+ +K+N ++ K D+ +K+N+ +D+
Sbjct: 1190 DMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDM 1227
Score = 33.5 bits (73), Expect = 0.29
Identities = 18/92 (19%), Positives = 42/92 (45%)
Frame = +3
Query: 474 RFNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFS 653
+ N L++ K D+ +K+N+ +D+ +K+N ++ K D+ +
Sbjct: 1172 KVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVA 1231
Query: 654 KLNSLYE*NSTCKTQSRDDVICFSKLNLRNDV 749
K+N ++ K D+ +K+N+ +D+
Sbjct: 1232 KVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDM 1263
Score = 31.9 bits (69), Expect = 0.90
Identities = 25/148 (16%), Positives = 56/148 (37%)
Frame = +3
Query: 474 RFNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFS 653
+ N ++ K D+ +K+N+ +D+ +K+N ++ K D+ +
Sbjct: 1208 KVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVA 1267
Query: 654 KLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICFQN*TGFTXIILLVKHNQGMMSFXFS 833
K+N ++ K D+ +K+N+ +D+ + L+ K N +
Sbjct: 1268 KVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNMSHDMSLVA 1327
Query: 834 XLNWLXXXNSTCKTQSKDDVICFSKLXG 917
+N K D+ +K+ G
Sbjct: 1328 KVNVSHEMTLVAKVNVSHDMTLVAKVNG 1355
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/92 (18%), Positives = 41/92 (44%)
Frame = +3
Query: 474 RFNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFS 653
+ N ++ K D+ +K+N+ +D+ +K+N ++ K D+ +
Sbjct: 1184 KVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVA 1243
Query: 654 KLNSLYE*NSTCKTQSRDDVICFSKLNLRNDV 749
K+N ++ K D+ +K+N+ +D+
Sbjct: 1244 KVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDM 1275
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/92 (18%), Positives = 41/92 (44%)
Frame = +3
Query: 474 RFNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFS 653
+ N ++ K D+ +K+N+ +D+ +K+N ++ K D+ +
Sbjct: 1196 KVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVA 1255
Query: 654 KLNSLYE*NSTCKTQSRDDVICFSKLNLRNDV 749
K+N ++ K D+ +K+N+ +D+
Sbjct: 1256 KVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDM 1287
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/92 (18%), Positives = 41/92 (44%)
Frame = +3
Query: 474 RFNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFS 653
+ N ++ K D+ +K+N+ +D+ +K+N ++ K D+ +
Sbjct: 1148 KVNVSHDMTLVAKVNVSHDMTLVAKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVA 1207
Query: 654 KLNSLYE*NSTCKTQSRDDVICFSKLNLRNDV 749
K+N ++ K D+ +K+N+ +D+
Sbjct: 1208 KVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDM 1239
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/92 (18%), Positives = 41/92 (44%)
Frame = +3
Query: 474 RFNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFS 653
+ N ++ K D+ +K+N+ +D+ +K+N ++ K D+ +
Sbjct: 1160 KVNVSHDMTLVAKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVA 1219
Query: 654 KLNSLYE*NSTCKTQSRDDVICFSKLNLRNDV 749
K+N ++ K D+ +K+N+ +D+
Sbjct: 1220 KVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDM 1251
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 33.9 bits (74), Expect = 0.22
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Frame = +3
Query: 12 MKAICIISGDVHGKIYFQQESANRP----LKISGYLLNLPRGLHGFHVHEYGDTSNGCTS 179
+KA +SG + G + F Q S N L ++G L +H V G+ + C +
Sbjct: 57 LKATFSMSG-IRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDLPVIYKGNAATTCNT 115
Query: 180 A--GEHFNP---TNEDHGAPDAEIRHVGDL-GNIKSVGYNSLTEINMMDNVMSLYGPHNI 341
G ++P A + VGDL G + N+++ + D+ + L G H I
Sbjct: 116 VALGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGI 174
Query: 342 IGRSLVVHT 368
GR+LV+ T
Sbjct: 175 FGRTLVLKT 183
>SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2)
Length = 375
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 312 RCPSCLFRSAN-CSQPTLCCPSRQHA*FQHRERRGPHWWD 196
RC C R + C L CPSR HA R RR +WD
Sbjct: 87 RCIPCGERGFSACRSGGLRCPSRSHAMRSMRTRRRARYWD 126
>SB_12293| Best HMM Match : OATP (HMM E-Value=0)
Length = 1446
Score = 29.5 bits (63), Expect = 4.8
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = +3
Query: 75 ANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDL 254
A + + I GY +P G H ++ + +T HF+P P+ R DL
Sbjct: 241 ARQDVVIDGY--RIPSGYHVAYLTKASNTDPSIFPGPNHFDPKRWRTSCPEVYERKNMDL 298
Query: 255 GNIKSVGYNSLTEINMMDNVMS 320
++K+ + T DN S
Sbjct: 299 NSVKASTTPTTTPDGFGDNAFS 320
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,365,484
Number of Sequences: 59808
Number of extensions: 612631
Number of successful extensions: 1261
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3201496110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -