Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10d17
(429 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29) 32 0.23
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3) 31 0.31
SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9) 31 0.41
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.94
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.94
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024) 29 2.2
SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) 29 2.2
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 28 2.9
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 2.9
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_40768| Best HMM Match : TM_helix (HMM E-Value=7.7) 27 5.0
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 27 5.0
SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22) 27 5.0
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 27 5.0
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_58485| Best HMM Match : COX2 (HMM E-Value=0) 27 8.7
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 27 8.7
SB_27578| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 27 8.7
SB_14168| Best HMM Match : COX2 (HMM E-Value=0) 27 8.7
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 27 8.7
>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
Length = 447
Score = 31.9 bits (69), Expect = 0.23
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 124 NADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 294
NA NG P + P+ PP Y P NG +P+ Y+ P G+P + PF G
Sbjct: 309 NAPPFNGQPPYNTPPFNGQPPY-YTPPFNG-QPL----YHTPPFNGQPPYNTPPFNG 359
Score = 29.1 bits (62), Expect = 1.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +1
Query: 142 GYEPIDNRPYIVNPPKDYN-PNGNGYEPID----NG--AYYVDPPQGRPYFKPTPFPG 294
G P + P+ PP YN P NG P + NG YY P G+P + PF G
Sbjct: 293 GQPPYNAPPFTGQPP--YNAPPFNGQPPYNTPPFNGQPPYYTPPFNGQPLYHTPPFNG 348
>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
Length = 1165
Score = 31.5 bits (68), Expect = 0.31
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 140 TATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 304
T T L T L L ITTL+ T + V IT TLP +T++LPL ++ +
Sbjct: 541 TTTLPLVVITTILPLVTITTLLPLVVITTILPLVVITTTLPLVAITTTLPLVIITTI 597
Score = 30.7 bits (66), Expect = 0.54
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 122 KTLTQETATNLLTTARTSLILPKITTLMETATNLSTTVH---ITWTLPKADLTSSLPL 286
+TL + + +L L ITT++ T ++TT+H IT TLP +T+ LPL
Sbjct: 499 QTLLNHASKKAILAITNTLPLVVITTILHLVT-ITTTLHLVTITTTLPLVVITTILPL 555
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 155 LTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 304
L T L L ITT++ T + V IT TLP +T+ LPL + +
Sbjct: 645 LVVITTILPLVVITTILHLVAITTILPLVVITTTLPLVTITTILPLVAITTI 696
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 155 LTTARTSLILPKITTLMETATNLSTT--VHITWTLPKADLTSSLPL 286
L T T L L ITT++ +T V IT TLP +T+ LPL
Sbjct: 555 LVTITTLLPLVVITTILPLVVITTTLPLVAITTTLPLVIITTILPL 600
>SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9)
Length = 678
Score = 31.1 bits (67), Expect = 0.41
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 155 LTTARTSLILPKITT--LMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 304
L T T+L L ITT L+ T + V IT TLP +T+ LPL ++ +
Sbjct: 282 LVTITTTLPLVVITTILLLVVITTILPLVAITTTLPLVAITTILPLVVITTI 333
Score = 28.7 bits (61), Expect = 2.2
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 140 TATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 304
T T L T L L ITT++ T + V IT TLP +T+ LPL + +
Sbjct: 619 TTTLPLVVITTILPLVAITTILPLVAITTILPLVVITTTLPLVTITTILPLVAITTI 675
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 146 TNLLTTARTSLILP--KITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 304
T +L + ILP ITT++ T + V IT TLP +T+ LPL ++ +
Sbjct: 79 TTILPLVDITTILPLVAITTILPLVVITTILPLVVITTTLPLVAITTILPLVVITTI 135
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 125 TLTQETATNLLTTARTSLILPK--ITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSL 292
TL T +L + ILP ITT++ T + V IT TLP +T+ LPL
Sbjct: 513 TLPLVAITTILPLVVITTILPLVVITTILHLVAITTILPLVAITTTLPLVVITTILPLVA 572
Query: 293 VLAV 304
+ +
Sbjct: 573 ITTI 576
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 155 LTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 304
L T L L ITT++ T + V IT TLP +T+ LPL ++ +
Sbjct: 480 LVVITTILPLVVITTILPLVVITTILPLVVITTTLPLVAITTILPLVVITTI 531
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.7 bits (66), Expect = 0.54
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +1
Query: 145 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY--YVDPPQGRPYFKPTPFP 291
Y P N PY P Y P N Y P N Y +PP P + P P P
Sbjct: 116 YPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNP 167
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +1
Query: 145 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY----YVDPPQGRPYFKPTPFP 291
Y P N PY P Y P+ N Y P N Y Y PP P P P P
Sbjct: 124 YPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPP 177
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +1
Query: 145 YEPIDNRPYIVNPPKDYNPNGN-GYEPIDNGAYYVDPPQGRPYFKPTPFP 291
Y P N PY P Y P N Y P N Y PP + P P P
Sbjct: 108 YPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPY---PPSPNAPYPPPPNP 154
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +1
Query: 145 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG-RPYFKPTP 285
Y P N PY P Y P N P Y PP P + P P
Sbjct: 179 YPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPP 226
>SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 29.9 bits (64), Expect = 0.94
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 125 TLTQETATNLLTTART--SLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLV 295
T+T TN TT T + I+ TT+ T T ++TT+ T T +T+++ +++
Sbjct: 8 TVTTTIITNATTTIITLSTTIITTTTTITTTTTTITTTITPTITTTTTIITTTITTTII 66
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 29.9 bits (64), Expect = 0.94
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 125 TLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 304
T T T TN+ TT T++ ITT + T T ++TT IT T+ +T+++ +++
Sbjct: 1058 TTTIITITNITTTINTTINTTIITTTI-TTTIITTT--ITTTIITTTITTTITTTIITTT 1114
Query: 305 GSKEYLRKLIT 337
+ + IT
Sbjct: 1115 VTTTIITTTIT 1125
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 128 LTQETATNLLTTA-RTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPL 286
+T T ++TT T++I ITT + T T TT IT T+ +T++ P+
Sbjct: 1080 ITTTITTTIITTTITTTIITTTITTTITTTIITTTVTTTIITTTITTTIITTTDPI 1135
>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 270 VRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVAVS*VSV 124
VR + R VV R S+RVV+ + VR V+ R+VA++ V V
Sbjct: 772 VRVVMRRYVTSVRVVMRRYVASVRVVMPRYVASVRVVMRRYVAIASVRV 820
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -1
Query: 270 VRSALGR-VHVICTVVDRFVAV-SIRVVIFGRINDVRAVVNRFVAVS*VSVFHYLNWV 103
VR + R V + V+ R+VA+ S+RVV+ + VR V+ R+VA V + Y+ V
Sbjct: 794 VRVVMPRYVASVRVVMRRYVAIASVRVVMRRYVASVRVVMRRYVASVRVVMRRYVTSV 851
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 270 VRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVA 142
VR + R VV R S+RVV+ + VR V+ R+VA
Sbjct: 818 VRVVMRRYVASVRVVMRRYVASVRVVMRRYVTSVRVVMRRYVA 860
>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
Length = 249
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 131 TQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLA 301
+Q T TT + ITT T T +STT+ T T T++ +++++
Sbjct: 79 SQNGTTTTTTTFSATTTTTTITTTTTTTTTISTTISTTTTTTTISTTTTTITAVIIS 135
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 125 TLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLA 301
T T TA +++T T+ TT+ T T +TT+ IT T+ T + ++ ++
Sbjct: 125 TTTTITAV-IISTTTTTTSTANTTTITATITTTTTTITITATITTITTTITATITTTIS 182
>SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 140 TATNLLTTARTSLILPKITTLMETATNLSTTVH--ITWTLPKADLTSSLPLSLV 295
T + ++TT + +I ITT+ + T L+TT+ I LP TS PL ++
Sbjct: 20 TISQIITTL-SRIITDPITTISQIITTLATTISQIIRTPLPIITTTSRTPLRII 72
>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
Length = 352
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 140 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 253
T TN++TTA T+ I+T+ T T +T + I T+
Sbjct: 297 TNTNIITTATTTTTSTTISTITVTITTTTTIIIIVITI 334
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 158 TTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSS 277
T A + + PK TT +ET TTV + T P + TS+
Sbjct: 229 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 267
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 143 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 274
AT +TT ++ P TT TAT +TT T T P A T+
Sbjct: 96 ATATITTYTATVTAPNATTTTPTATTTTTTT-TTTTTPYATTTT 138
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 98 LKTQLR*WKTLTQETATNLLTT-ARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 274
L+T + T ET TT A + + PK TT +ET TTV + T P + TS
Sbjct: 755 LETSIVPETTAASETTVAPETTDAPATTLAPKTTTALETTVAAKTTV-VPETTPALETTS 813
Query: 275 S 277
+
Sbjct: 814 A 814
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 158 TTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSS 277
T A + + PK TT +ET TTV + T P + TS+
Sbjct: 2291 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 2329
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -1
Query: 345 HYFVINFLRYSLLPTASTRERGRLEVRSALGRVHVICT 232
HY + F R PT S R R R E A RVHV C+
Sbjct: 973 HYLKVGFERLPSPPTNSRRRRLRSE---ADARVHVTCS 1007
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 125 TLTQETATNLLTTARTSLILPKITTLME-TATNLSTTVHITWTLPKADLTS 274
T + T +L+TTA + +TT E T +L+TT + T P+ S
Sbjct: 164 TAPETTTASLVTTAPETTTASLVTTAPEATTASLATTASLATTAPETTTAS 214
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 125 TLTQETATNLLTTARTSLILPKITTLMETAT-NLSTTVHITWTLPKA 262
T + T +L+TTA + +TT ET T +L+TT T P+A
Sbjct: 657 TAPEATTASLVTTAPEATTASLLTTAPETTTASLATTAPEATTAPEA 703
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 TLTQETATNLLTTARTSLILPKITTLME-TATNLSTTVHITWTLPKADLTSSLPLSLVLA 301
T + T +L TTA + +TT E T +TT + T P+A S +L++
Sbjct: 74 TAPETTTASLATTAPETTTASFLTTAPEATTAPETTTASLVTTAPEATTASLATTALLVT 133
Query: 302 VGSKEYLRKLIT 337
+ L+T
Sbjct: 134 TAPEATTASLVT 145
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 TLTQETATNLLTTARTSLILPKITTLMETAT-NLSTTVHITWTLPKADLTSSLPLSLVLA 301
T + T +L+TTA + +TT ET T +L+TT T T A +L++
Sbjct: 314 TAPETTTASLVTTAPEATTASLVTTAPETTTASLATTAPETTTASLATTAPETTTALLVT 373
Query: 302 VGSKEYLRKLIT 337
+ L T
Sbjct: 374 TAPETATASLAT 385
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 TLTQETATNLLTTARTSLILPKITTLMETAT-NLSTTVHITWTLPKADLTSSLPLSLVLA 301
T + T +L TTA + +TT ET T +L TT T P+A + ++
Sbjct: 242 TAPEATTASLATTAPEATTASLVTTAPETTTASLVTTAPEATTAPEATTAPEAATASLVT 301
Query: 302 VGSKEYLRKLIT 337
+ L+T
Sbjct: 302 TAPEATTASLLT 313
>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 198 P*WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNILEN 329
P + L T + CI R +PT + P PW +++N+ ++
Sbjct: 560 PRLEMLNTLLRECIDRHAPLKPTKMTRPPAPWLKELDIQNLQQD 603
>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -1
Query: 276 LEVRSALGRVHVICTVVDRFVAVSI---RVVIFGRINDVRAVVNRFVAVS*VSVFHYLNW 106
++ S + + +IC +DRF AV + R +I G+ ++ F+ + + + Y+
Sbjct: 114 IDTASVVSILSMICITIDRFCAVVLPMKRDLITGKTRTATIILTWFLGILYTAPWFYVAK 173
Query: 105 VLSVG 91
+ +VG
Sbjct: 174 IRTVG 178
>SB_40768| Best HMM Match : TM_helix (HMM E-Value=7.7)
Length = 122
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +2
Query: 128 LTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 304
+T T T + T T +I ITT+ T + TT+ IT T + +++ ++++ +
Sbjct: 2 ITTITITITMITTITVIITTMITTITVIITTMITTITITTTTIITTMITTIITTVIIII 60
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 94 NAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPP 255
N Q K SG ++P RPY P + PNG+ E P++N +PP
Sbjct: 176 NVQGGNKPGPENHSGPPFKP-GQRPYQHGGPDQFGPNGHTEEMRPLENRGPPFEPP 230
>SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 125 TLTQETATNLLTTARTSLILPKITTLMETATNLSTT 232
T+T TAT TT T+ TT T T +TT
Sbjct: 28 TITTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTT 63
>SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22)
Length = 266
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/53 (26%), Positives = 32/53 (60%)
Frame = +2
Query: 146 TNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 304
TN++TT+ T++I T+ T T ++ T+ IT T+ +T ++ +++ + +
Sbjct: 168 TNIITTSNTNIITTTTITITITIT-ITITITITITI-TITITITITITITITI 218
>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +2
Query: 92 PTLKTQLR*WKTLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLT 271
P+L TQ T + T T T+ L TTL+ T +L+T + T P+A +T
Sbjct: 716 PSLTTQTT--LIATTPSLTTQTTLIATTPSLTTQTTLIATTPSLTTQTTLIATTPEASIT 773
Query: 272 SSLPLS 289
+ ++
Sbjct: 774 QTTTIA 779
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 95 TLKTQLR*WKTLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLP 256
T+ T + +T TAT T + + ITT+ T T ++T + IT P
Sbjct: 252 TITTTIAIAIAITTTTATPTAITITITTTITIITTITITTTTITTAITITTATP 305
>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 119 WKTLTQETATNLLTTARTSLILPKITTLMETATN-LSTTVHITWTLPKADLTSSLPLSL 292
W + +T + R + ++ ++ + AT + T H++WTLP + +P +L
Sbjct: 474 WARIILKTEKIGCVSKRKRIRCDEVQSMWDEATQPVVTNFHVSWTLPDGWVARCIPYNL 532
>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
Length = 239
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -1
Query: 195 VIFGRINDVRAVVNRF--VAVS*VSVFHYLNWVLSVGHSQ 82
V +G+ +++ + F + + VS+ Y+NWVLS GH +
Sbjct: 201 VFYGQCSEICGANHSFMPIVIEAVSLDKYINWVLS-GHDE 239
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 125 TLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADL 268
T T T TTA T+ TT T T +TT+ I W D+
Sbjct: 526 TATATTTATATTTATTAATATTTTTTTTTNTTTNTTI-IIWIAAVTDV 572
>SB_27578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 166 PYIVNPPKDY--NPNGNGYEPIDNGAYYVDPPQG 261
P+ ++P Y +PNG Y NG YV P G
Sbjct: 8 PFSISPGVQYVFHPNGVQYVTQPNGVQYVTHPNG 41
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 YIVNPPKDY--NPNGNGYEPIDNGAYYVDPPQGRPY 270
Y+ +P Y +PNG Y NG +V P G Y
Sbjct: 116 YVTHPNAQYVAHPNGAQYVTHPNGVQFVTHPNGVQY 151
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 131 TQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSL 280
T T ++ TT T+ I ITT T TT HI T+P A + +++
Sbjct: 1092 TTITTAHINTTITTAHINTTITTAHINTT--ITTAHINTTIPTAHINTTI 1139
>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
Length = 239
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -1
Query: 195 VIFGRINDVRAVVNRF--VAVS*VSVFHYLNWVLSVGHSQ 82
V +G+ +++ + F + + VS+ Y+NWVLS GH +
Sbjct: 201 VFYGQCSEICGANHSFMPIVIEAVSLDKYINWVLS-GHDE 239
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 46 KMKFFMIFVLALLAMANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYN 198
K+K + F+ ALLA A P V + NG ++ P + PP D++
Sbjct: 13 KLKQNIEFLDALLADLQASSPAAVGTRTQATNGRGSPESPPPPLPPPPDFD 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,626,544
Number of Sequences: 59808
Number of extensions: 276845
Number of successful extensions: 1168
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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