Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d04
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   72   2e-13
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   2e-13
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.002
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.007
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   2.6  
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)                   27   4.6  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 45/115 (39%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
 Frame = +3

Query: 12  TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXX 191
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D               
Sbjct: 105 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 164

Query: 192 XXXXXXXXXXXXXXXXXNQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 344
                             + +   +  N  S   S+E  Q  PPA H+YNELP +
Sbjct: 165 SVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 45/115 (39%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
 Frame = +3

Query: 12  TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXX 191
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D               
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 78

Query: 192 XXXXXXXXXXXXXXXXXNQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 344
                             + +   +  N  S   S+E  Q  PPA H+YNELP +
Sbjct: 79  SVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +3

Query: 96  HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 272
           HFLGLAG PRRYSD+ D                                 + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 273 LPS---SIE*YQNLPPAEHSYNELPIL 344
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +3

Query: 96  HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 272
           HFLGLAG PRRYSD+ D                                 + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 273 LPS---SIE*YQNLPPAEHSYNELPIL 344
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +3

Query: 96  HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 272
           HFLGLAG PRRYSD+ D                                 + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 273 LPS---SIE*YQNLPPAEHSYNELPIL 344
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +3

Query: 96  HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 272
           HFLGLAG PRRYSD+ D                                 + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 273 LPS---SIE*YQNLPPAEHSYNELPIL 344
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +3

Query: 96  HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 272
           HFLGLAG PRRYSD+ D                                 + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 273 LPS---SIE*YQNLPPAEHSYNELPIL 344
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 96  HFLGLAGIPRRYSDYPD 146
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 5   FIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 121
           FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 16  FIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 271 ISHHQLNDIKIYHQQNIHIMNYQF 342
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 75  NITFFPQHFLGLAGIPRRY 131
           +I F  +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192


>SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)
          Length = 596

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 130 YRRGIPAKPKKCCGKNVIFTP 68
           Y R I A+ K+C GKNV+  P
Sbjct: 120 YFRAIIARCKECLGKNVVLIP 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,121,415
Number of Sequences: 59808
Number of extensions: 125824
Number of successful extensions: 244
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)