Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b17
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_50917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = +1

Query: 169 LKQSDYLNLVQCETLEDLKLHLQGTDYGT-FLANEPSPLSVSTIDDKLREKLVIEFQHLR 345
           +K+ + + ++QC+ +ED+K   Q  D G   +A + S  +V+    +L+++L      +R
Sbjct: 361 MKEIEEMQVLQCKEIEDIKATAQSRDSGDGSVARKESLENVA----QLKQQLQAYEHEIR 416

Query: 346 NHSVEPLSTFLDFITYSYMIDNIILLITGTLHQR 447
           N   E  +    F      +++ I ++ G + +R
Sbjct: 417 NLKAELKNQKHGFTECKQSLESAITVLEGRIKER 450


>SB_50917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
 Frame = +1

Query: 64  LFLVSLKIIIKMKGCIFNID-AGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQG 240
           +FL     + K K  + N+  A  L GL  G     ++Q  + +LVQ   ++++++H   
Sbjct: 39  IFLGKKLRLKKSKYLLVNLTVADLLTGLV-GLGYTKVRQETFNSLVQPGQIQNVEIHPLL 97

Query: 241 TDYGTFLANEPSPLSVSTIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIIL 420
           + +  F +   S LS+STI  +    ++  F+H +       +  L     S ++  + +
Sbjct: 98  SVHLLFASQ--SMLSLSTIAMERAFAILSPFRHRQTEKKHYFTVILSAWLISMILSGLTM 155

Query: 421 LITGTLHQRP 450
           L   T +Q+P
Sbjct: 156 LFYLTSNQKP 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,169,920
Number of Sequences: 59808
Number of extensions: 475648
Number of successful extensions: 1162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)