Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0073
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53246| Best HMM Match : AMP-binding (HMM E-Value=7.8e-37) 32 0.44
SB_16214| Best HMM Match : AMP-binding (HMM E-Value=0) 32 0.44
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21) 29 3.1
SB_59170| Best HMM Match : RVT_1 (HMM E-Value=0.13) 29 4.1
SB_15890| Best HMM Match : ArsC (HMM E-Value=0.94) 29 4.1
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_38681| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 29 5.4
SB_18090| Best HMM Match : RVT_1 (HMM E-Value=0.59) 29 5.4
SB_14200| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) 28 7.2
SB_16275| Best HMM Match : RVT_1 (HMM E-Value=1.7e-16) 28 9.5
>SB_53246| Best HMM Match : AMP-binding (HMM E-Value=7.8e-37)
Length = 497
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 532 SVHQCFSFSRLSMVSGTSDVTAAIALDLRARDELTSPPYSKLSL 401
SV C F+R S GTS+ A++ RDELT + K+S+
Sbjct: 265 SVFDCLPFARASYSLGTSEAIVT-AMEKFTRDELTEENFGKMSV 307
>SB_16214| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 549
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 532 SVHQCFSFSRLSMVSGTSDVTAAIALDLRARDELTSPPYSKLSL 401
SV C F+R S GTS+ A++ RDELT + K+S+
Sbjct: 317 SVFDCLPFARASYSLGTSEAIVT-AMEKFTRDELTEENFGKMSV 359
>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 29.9 bits (64), Expect = 2.3
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = -2
Query: 760 HCIDYICRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTR-----SRPTKLAVRMYATP 596
HC D I + T+ RL I+ALK ++ + ++ VYC + R + P A+ Y
Sbjct: 575 HC-DAIVKKATK--RLYAIRALKKSGLSSNDLIQVYCSTMRPVLEYASPVWSALPEYLVE 631
Query: 595 LSLHWQH*NTVIENQLKYNNFSVHQCFSFSRLSMVSGTSDVTAAIALDLRAR 440
L Q V+ ++ + N S H+ S +RL + + TA IAL +A+
Sbjct: 632 LVESVQ--KKVL--RIVFPNLSYHEALSHARLETLCQRRE-TACIALVAKAK 678
>SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21)
Length = 692
Score = 29.5 bits (63), Expect = 3.1
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Frame = -2
Query: 760 HCIDYICRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTRSRPTKLAVRMYATPL-SLH 584
HC D I + T+ RL I+ALK ++ + ++ VYC + R V YA+P+ S
Sbjct: 539 HC-DAIVKKATK--RLYAIRALKKCGLSSNDLIQVYCSTMR------PVLEYASPVWSAL 589
Query: 583 WQH*NTVIEN-QLK-----YNNFSVHQCFSFSRLSMVSGTSDVTAAIALDLRAR 440
++ ++E+ Q+K + N S H+ S ++L + + TA IAL +A+
Sbjct: 590 PEYLVELVESVQIKVLRIVFPNLSYHEALSHAKLETLCQRRE-TACIALVAKAK 642
>SB_59170| Best HMM Match : RVT_1 (HMM E-Value=0.13)
Length = 679
Score = 29.1 bits (62), Expect = 4.1
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = -2
Query: 760 HCIDYICRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTR-----SRPTKLAVRMYATP 596
HC D I + T+ RL I+ALK ++ + ++ VYC + R + P A+ Y
Sbjct: 526 HC-DAIVKKATK--RLYAIRALKKSGLSSNNLIQVYCSTMRPVLEYASPVWSALPEYLVE 582
Query: 595 LSLHWQH*NTVIENQLKYNNFSVHQCFSFSRLSMVSGTSDVTAAIALDLRAR 440
L Q V+ ++ + N S H+ S ++L + + TA IAL +A+
Sbjct: 583 LVESVQ--KKVL--RIVFPNLSYHEALSHAKLETLCQRRE-TACIALVAKAK 629
>SB_15890| Best HMM Match : ArsC (HMM E-Value=0.94)
Length = 310
Score = 29.1 bits (62), Expect = 4.1
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = -2
Query: 760 HCIDYICRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTR-----SRPTKLAVRMYATP 596
HC D I + T+ RL I+ALK ++ + ++ VYC + R + P A+ Y
Sbjct: 157 HC-DAIVKKATK--RLYAIRALKKSGLSSNNLIQVYCSTMRPVLEYASPVWSALPEYLVE 213
Query: 595 LSLHWQH*NTVIENQLKYNNFSVHQCFSFSRLSMVSGTSDVTAAIALDLRAR 440
L Q V+ ++ + N S H+ S ++L + + TA IAL +A+
Sbjct: 214 LVESVQ--KKVL--RIVFPNLSYHEALSHAKLETLCQRRE-TACIALVAKAK 260
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 28.7 bits (61), Expect = 5.4
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = -2
Query: 760 HCIDYICRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTR-----SRPTKLAVRMYATP 596
HC D I + T+ RL I+ALK ++ + ++ VYC + R + P A+ Y
Sbjct: 1008 HC-DAIVKKATK--RLYAIRALKKSGLSSNDLIQVYCSTMRPVLEYASPVWSALPEYLVE 1064
Query: 595 LSLHWQH*NTVIENQLKYNNFSVHQCFSFSRLSMVSGTSDVTAAIALDLRAR 440
L Q V+ ++ + N S H+ S ++L + + TA IAL +A+
Sbjct: 1065 LVESVQ--KKVL--RIVFPNLSYHEALSHAKLETLCQRRE-TACIALVAKAK 1111
>SB_38681| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 559
Score = 28.7 bits (61), Expect = 5.4
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = -2
Query: 760 HCIDYICRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTR-----SRPTKLAVRMYATP 596
HC D I + T+ RL I+ALK ++ + ++ VYC + R + P A+ Y
Sbjct: 406 HC-DAIVKKATK--RLYAIRALKKSGLSSNDLIQVYCSTMRPVLEYASPVWSALPEYLVE 462
Query: 595 LSLHWQH*NTVIENQLKYNNFSVHQCFSFSRLSMVSGTSDVTAAIALDLRAR 440
L Q V+ ++ + N S H+ S ++L + + TA IAL +A+
Sbjct: 463 LVESVQ--KKVL--RIVFPNLSYHEALSHAKLETLCRRRE-TACIALVAKAK 509
>SB_18090| Best HMM Match : RVT_1 (HMM E-Value=0.59)
Length = 427
Score = 28.7 bits (61), Expect = 5.4
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = -2
Query: 760 HCIDYICRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTR-----SRPTKLAVRMYATP 596
HC D I + T+ RL I+ALK ++ + ++ VYC + R + P A+ Y
Sbjct: 274 HC-DAIVKKATK--RLYAIRALKKSGLSSNDLIQVYCSTMRPVLEYASPVWSALPEYLVE 330
Query: 595 LSLHWQH*NTVIENQLKYNNFSVHQCFSFSRLSMVSGTSDVTAAIALDLRAR 440
L Q V+ ++ + N S H+ S ++L + + TA IAL +A+
Sbjct: 331 LVESVQ--KKVL--RIVFPNLSYHEALSHAKLETLCQRRE-TACIALVAKAK 377
>SB_14200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 327 FASRSGSCGRRLDREVLFLNGGQQGCE 247
FASR + G+RL R+++ GQ+G E
Sbjct: 3 FASRGWNFGKRLSRKIVTQENGQRGLE 29
>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
Length = 634
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -2
Query: 742 CRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTRSRPTKLAVRMYATPLSLHWQH*NTV 563
CR R ++ ++ A Y++ SL LV+CK + KL + Y L + W
Sbjct: 177 CRKRLKYAECLRVYAPLSYSVTCSLTFLVFCKIPTN--VKLDPKSY-NKLRISWTQPEDP 233
Query: 562 IENQLKYNN 536
EN + Y+N
Sbjct: 234 -ENSIFYDN 241
>SB_16275| Best HMM Match : RVT_1 (HMM E-Value=1.7e-16)
Length = 409
Score = 27.9 bits (59), Expect = 9.5
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Frame = -2
Query: 760 HCIDYICRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTR-----SRPTKLAVRMYATP 596
HC D I + T+ RL I ALK ++ + ++ VYC + R + P A+ Y
Sbjct: 281 HC-DAIVKKATK-RRLYAIGALKKSGLSSNDLIQVYCSTMRPVLEYASPVWSALPEYLVE 338
Query: 595 LSLHWQH*NTVIENQLKYNNFSVHQCFSFSRLSMVSGTSDVTAAIALDLRAR 440
L Q V+ ++ + N S H+ S ++L + + TA IAL +A+
Sbjct: 339 LVESVQ--KKVL--RIVFPNLSYHEALSHAKLETLCQRRE-TACIALVAKAK 385
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,777,842
Number of Sequences: 59808
Number of extensions: 403516
Number of successful extensions: 990
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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