Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0072
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  
SB_37120| Best HMM Match : EB (HMM E-Value=4.2)                        28   5.2  
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        28   5.2  
SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               27   6.9  
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      27   9.1  

>SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1650

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 370 ISERVNVCRSCGVRWRASADLSAPRVL 290
           + +R+  CRSCG+R RA   +    VL
Sbjct: 422 VEQRICACRSCGLRSRAMRSMRTDDVL 448


>SB_37120| Best HMM Match : EB (HMM E-Value=4.2)
          Length = 376

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 276 NPAALAGSSTNTGLPTSGCRRHTYQE 199
           +P ++  + T TG PTS  + HTY E
Sbjct: 23  SPTSITKAHTYTGSPTSKTKAHTYTE 48


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 267  PLGCARCCRTRGAERSADARHRTPHDRHTFTRSEIRCSAFC 389
            PL     C  RGAER      +         R ++RCS FC
Sbjct: 1022 PLSNGVSCLIRGAERKTAKMLQQKTGAKITIRPKVRCSTFC 1062


>SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 2352

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 391  KQKAEQRISERVNVCRSCGVRWRASADLSAPRVLQQRAQPSGVSGLLYKYRSSY 230
            KQ  + R+ E + + R+    WR  +    P +  + A  SGVSG L + R+S+
Sbjct: 885  KQFVKHRVDEILQLTRNG--EWRHCSKEQNPDIGSRGALHSGVSGTLAQLRTSF 936


>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 907

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 400 SSLKQKAEQRISERVNVCRSCGVRWRASADLSAPRVLQQRAQPSG 266
           S LK+       E+  VC  CG  +  S  L   +++   AQP+G
Sbjct: 160 SILKRHTRTHTKEKPYVCEICGKAFIQSNGLRFHQIVHTGAQPNG 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,817,650
Number of Sequences: 59808
Number of extensions: 248166
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)