Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0066
         (537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         31   0.79 
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_2045| Best HMM Match : EGF (HMM E-Value=0)                          27   7.3  

>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +3

Query: 27   SENICARNRGFNVDRVTGYYCNC 95
            S N C R+RG  VDR+ GY CNC
Sbjct: 1647 SSNPC-RSRGQCVDRLKGYSCNC 1668


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 12   NILNKSENICARNRGFNVDRVTGYYCNCL 98
            NI   + N C RN G  VD + G+ C CL
Sbjct: 7047 NINECNSNPC-RNNGTCVDGINGFTCRCL 7074


>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  LNKSENICARNRGFNVDRVTGYYCNCL 98
           +N+  +   RN G  VD V GY C CL
Sbjct: 514 INECASGPCRNNGTCVDEVNGYQCLCL 540


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,251,672
Number of Sequences: 59808
Number of extensions: 186625
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)