Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0048
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_253| Best HMM Match : GRP (HMM E-Value=0.61)                        30   1.6  
SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)             29   4.8  
SB_6911| Best HMM Match : Ank (HMM E-Value=0)                          28   8.4  

>SB_253| Best HMM Match : GRP (HMM E-Value=0.61)
          Length = 356

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 38  LFYFMFEKLLVARRPFQFHQDRW 106
           +F FM EKLL    P +FH +RW
Sbjct: 212 VFVFMSEKLLEHEDPAEFHNNRW 234


>SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)
          Length = 381

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 81  LSSFTRTGGRAKAQPGGVGFANNCPSASEGDL-TTQEQLLRE*IYYRIEI 227
           L+S +  GG++  +PG     ++   + EG++    EQL R+ +Y + EI
Sbjct: 31  LASESENGGQSSKKPGVSSLLSSLKGSKEGEVKNIAEQLTRDRVYSQDEI 80


>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1961

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = -3

Query: 418  LTFTLGNLP----RLLSNMVYAAFSSNTRSRLK 332
            L F L NL     ++  N+V+ +FS+NTR RLK
Sbjct: 1880 LRFMLSNLDFWQKQIKKNLVFPSFSTNTRYRLK 1912


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,772,326
Number of Sequences: 59808
Number of extensions: 310073
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)