Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0045
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   29   3.0  
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_48479| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)                    28   9.1  

>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           +Y  + Y Y++   H Y +YY         Y Y+ +Y    +Y  +Y
Sbjct: 118 YYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 164



 Score = 31.9 bits (69), Expect = 0.56
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           +Y  + Y Y++   H Y +YY         Y Y+ +Y    +Y  +Y
Sbjct: 117 YYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 163



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           +Y  + Y Y++   + Y +YY         Y Y+ +Y    +Y  +Y
Sbjct: 104 YYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYY 150



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           +Y  + Y Y++   + Y +YY         Y Y+ +Y    +Y  +Y
Sbjct: 107 YYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYY 153



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           +Y  + Y Y++   + Y +YY         Y Y+ +Y    +Y  +Y
Sbjct: 103 YYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYY 149



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           +Y  + Y Y++   + Y +YY         Y Y+ +Y    +Y  +Y
Sbjct: 105 YYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYY 151



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           +Y  + Y Y++   + Y +YY         Y Y+ +Y    +Y  +Y
Sbjct: 106 YYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYY 152



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/57 (21%), Positives = 24/57 (42%)
 Frame = +1

Query: 229 ETHVNISFV*HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           + H    +  +Y  + Y Y++   + Y +YY         Y Y+ +Y    +Y  +Y
Sbjct: 99  QRHAYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYY 155



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           +Y  + Y Y++   + Y  YY         Y Y+ +Y    +Y  +Y
Sbjct: 114 YYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYY 160



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLH 396
           +Y  + Y Y++   + Y +YY         Y Y+ +Y    +Y  H
Sbjct: 120 YYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYH 165



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/47 (21%), Positives = 21/47 (44%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           +Y  + Y Y++   + + +YY         Y Y+ +Y    +Y  +Y
Sbjct: 115 YYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 161


>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 254 TKLILTCVSIEYYLPINFFVANE*KV*LNYTYYSLFIVWQTFRILLFFFPCFSIFI 87
           T LI+T  S+  +LP N+++       L Y++Y+L IV+     L +   C +I +
Sbjct: 476 TLLIVTLASLVTWLPSNYYLVIH---RLYYSFYNLNIVYMALLFLQYSNSCINIVV 528


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/77 (25%), Positives = 29/77 (37%)
 Frame = +1

Query: 220 YSIETHVNISFV*HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHY 399
           + I  ++ I    +  ++IY Y +   +TY + Y         Y Y   YV V  Y   Y
Sbjct: 9   FYIYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVY 68

Query: 400 PATNTNKYCSTIMIYTY 450
                  Y   I IY Y
Sbjct: 69  VYVYVYVY---IYIYLY 82


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
 Frame = +1

Query: 196  TKKFIGK*YSIETHVNISFV*HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVL 375
            T  FI K Y +E  V      HY+     Y+   KHT +   +L +   S Y+   F   
Sbjct: 1254 TITFINKYYGVEDKVRAQVEYHYSKLQLHYNEYKKHTERMPAMLKS---SAYSALEFVNK 1310

Query: 376  VIFYTL-HYPATNTNKYCSTIMIYTYTVK 459
             I Y   H+   N       + I  Y  K
Sbjct: 1311 TIRYAHGHFGTLNQTMSAKMMKIRAYMTK 1339


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 534  AKNDGSWLLLSLIEFSHLSSSHLPRFDCICINHNCTTIFVGIRCWI 397
            A  DG+W++L   +  HL++S +P  + +C   N  T     R W+
Sbjct: 2495 AVKDGTWVVL---QNCHLATSWMPTLEKLCEELNPDTTHPDFRLWL 2537


>SB_48479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -3

Query: 254 TKLILTCVSIEYYLPINFFVANE*KV*LNYTYYSLFIVWQTFRILLFFFPCFSIFI 87
           T LI+T  S+  +LP N+++       L +++Y+L IV+     L +   C +I +
Sbjct: 219 TLLIVTLASLVTWLPSNYYLVIH---RLYFSFYNLNIVYMALLFLQYSNSCINIVV 271


>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
          Length = 861

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 250 FV*HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVL 375
           F  HY  F + Y   T H  KF+ +LL     L    T Y++
Sbjct: 804 FTWHYGGFTWHYGGFTSHYGKFHGVLLRFHKGLSRLLTGYIM 845


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,127,535
Number of Sequences: 59808
Number of extensions: 336189
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)