Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0043
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_34112| Best HMM Match : RVT_1 (HMM E-Value=0.041)                   29   4.8  
SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 524  FLNGHSHLSVSNRPSHHIATFLKRGIIITV 435
            FL   +  SV NR  H+I   L+RGI ++V
Sbjct: 2680 FLKTEASFSVMNRTRHNILNMLRRGINVSV 2709


>SB_34112| Best HMM Match : RVT_1 (HMM E-Value=0.041)
          Length = 858

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -2

Query: 610 KSKRSSFGDYFYVQHLCRNLILYEKKKNSFSMATVTSQ 497
           KSK S+  DY ++ H  R+L+   KKK++ +MA + ++
Sbjct: 380 KSKPSNVNDYLWIDHELRSLL---KKKDTKNMANLLNR 414


>SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 150 RSYLCLSTYMSTFNSQVGKFCYIQSRTCMDTVSNKSTYQPQSISPLHQADSNCTKFLYG 326
           R+ L LS +   +       C  Q  T + T+++K   +P + S LH  DS+   +LYG
Sbjct: 132 RNLLSLSEFHPNYKEAGQSDCLTQM-TSIHTMASK--LEPSTTSGLHMHDSHNQSYLYG 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,746,620
Number of Sequences: 59808
Number of extensions: 312662
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)