Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0018
         (358 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   6e-12
SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_17326| Best HMM Match : DUF1127 (HMM E-Value=0.71)                  28   1.9  
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.9  
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)                     28   2.6  
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     27   4.5  
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  
SB_55974| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  
SB_24722| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  

>SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 66.5 bits (155), Expect = 6e-12
 Identities = 31/59 (52%), Positives = 41/59 (69%)
 Frame = -2

Query: 303 RCPGLSRTRDGLLIASVALTLNRQIKDTRCYYMPHRLDMYVNSLSKVLEMDYKPQVVHE 127
           R  GLSRTRDGLL+  V L L RQ+KD   + M  RL+MY  SLS+ ++ +Y+P +VHE
Sbjct: 38  RYHGLSRTRDGLLVTEVDLNLCRQVKDKWGFQMTSRLEMYAKSLSEAVQRNYEPPIVHE 96


>SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 74  IDFGGHCWNGIA*NCFSFSCTTCGL*SISSTLLR 175
           +D     + G+  +C S+ C TCGL + SS+L +
Sbjct: 123 MDMPTEVYQGLNNSCTSWICCTCGLPNFSSSLFK 156


>SB_17326| Best HMM Match : DUF1127 (HMM E-Value=0.71)
          Length = 333

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 250 LDPEQTDQRHTLLLHAPPPGHVREQSQQSTRD 155
           LD E+T+++H  ++   P   VRE +++S  D
Sbjct: 81  LDDEETEEKHVTIVDPEPRRPVREDTERSLYD 112


>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 165 LC*DCSRTCPGGGACNNSVCL*SVC 239
           +C DCS TCP G      +C+  VC
Sbjct: 123 ICSDCSMTCPPGVERCEQMCVSGVC 147


>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
          Length = 502

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 202 PPPG-HVREQSQQSTRDGLQAAGRTRK*KAILSDPVPTMTTEIYVF 68
           P PG H REQS    R G   + + R+      + +PT   ++YVF
Sbjct: 21  PSPGKHAREQSCARHRPGRLPSRQPRRTNLRPLEGLPTFVGDVYVF 66


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 153 PSRVLC*DCSRTCPGGGACNN 215
           PS V C D    CP G  CN+
Sbjct: 758 PSAVCCADMQHCCPSGYTCND 778


>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 174 DCSRTCPGGGACNNSVC 224
           +C+  C G GAC++ VC
Sbjct: 142 NCTNGCSGHGACDSGVC 158


>SB_55974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 188 CT*TVSAKYSRWITSRRSYTKMKSNFKRSRSNNDHRNL 75
           C+  ++   S W TSR S T  KS+   SR     + L
Sbjct: 48  CSCWMAQMKSEWTTSRNSLTSPKSSSSHSRFRKTRQTL 85


>SB_24722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 60  SSQNT*ISVVIVGTGSLK-IAFHFRVRPAACNPSRVLC 170
           SS+ + + ++I+    L  I F  R RP    P+RV+C
Sbjct: 204 SSEVSIVIMLIITADRLNCIVFDIRARPLGIKPARVIC 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,390,217
Number of Sequences: 59808
Number of extensions: 214663
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)