Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0128
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.16 
SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_18962| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.7)            27   4.6  
SB_11666| Best HMM Match : Arc (HMM E-Value=5)                         27   4.6  
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_16417| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 88 LCNSGAFH--LGIKMPRAEFLQPGDPLV 11
          LC S   H  L  ++ R EFLQPGDPLV
Sbjct: 15 LCGSFGDHSYLSTRVDRIEFLQPGDPLV 42


>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -3

Query: 182 SLMRAVAYCVPASVFLFYVINTSILKNTPFYFMQFRSFSFRYKDASCRIPAARGSTSL 9
           S    +A C+  S+ L YV+ T  +K  P + +   S  FRY    C       S SL
Sbjct: 72  SKFNLLAICI-ISLVLIYVMCTLCIKRCPEFALTVTSLYFRYYCDYCDTFLTHDSNSL 128


>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 153 NAVRDCTH*TLTTNFCYFGCWKSSD 227
           ++V DC H  LT N   F  W+S +
Sbjct: 439 SSVLDCNHLVLTENITRFATWQSKE 463


>SB_18962| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.7)
          Length = 351

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 339 LYANKCIPISLIRQFE*RKERGGLRHII 256
           LY N+  P+ ++R+FE R E  G R ++
Sbjct: 313 LYTNRDPPMEVLRKFETRAEEKGRRSLV 340


>SB_11666| Best HMM Match : Arc (HMM E-Value=5)
          Length = 235

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 339 LYANKCIPISLIRQFE*RKERGGLRHII 256
           LY N+  P+ ++R+FE R E  G R ++
Sbjct: 173 LYTNRDPPMEVLRKFETRAEEKGRRSLV 200


>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 342 TLYANKCIPISLIRQFE*RKERGGLRHIIIQGYR 241
           TL  N  IPI+++R  E ++     RH+++Q  R
Sbjct: 664 TLNMNSAIPINILRPEENQRGVASPRHVLLQEAR 697


>SB_16417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 129 IKKEYGRRNAVRDCTH*TLTTNFCYFGCWK 218
           +K+E+    A+  CT  T    FC F C K
Sbjct: 16  VKEEHCNEAALPQCTQLTGDNQFCSFSCCK 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,479,736
Number of Sequences: 59808
Number of extensions: 191702
Number of successful extensions: 444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)