Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0100
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 199 1e-51
SB_3774| Best HMM Match : DivIC (HMM E-Value=4.4) 116 1e-26
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 95 5e-20
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 1e-17
SB_9909| Best HMM Match : AAA (HMM E-Value=0) 73 1e-13
SB_33442| Best HMM Match : AAA (HMM E-Value=0) 67 1e-11
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 42 3e-04
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_30385| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 39 0.003
SB_19460| Best HMM Match : AAA (HMM E-Value=0) 36 0.025
SB_30757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05) 31 0.55
SB_28977| Best HMM Match : AAA (HMM E-Value=0) 31 0.55
SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19) 30 1.7
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19) 30 1.7
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24) 29 2.2
SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0) 29 3.9
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12) 28 5.1
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 27 8.9
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 199 bits (486), Expect = 1e-51
Identities = 107/154 (69%), Positives = 117/154 (75%)
Frame = +3
Query: 144 LQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 323
++L+V EK +NLRRL+AQRNELNAKVRMLR GSYVGEVVKPMDKKKVLVKVH
Sbjct: 82 VKLVVTEKIKNLRRLEAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVH 141
Query: 324 PEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEM 503
PEGKFVVD+DK +D+ + VDPLVSLMMVEKVPDSTYEM
Sbjct: 142 PEGKFVVDIDKGIDMAE-----------------------VDPLVSLMMVEKVPDSTYEM 178
Query: 504 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
VGGLDKQIKEIKEVIELPVKHPELF+ALGI QPK
Sbjct: 179 VGGLDKQIKEIKEVIELPVKHPELFEALGIDQPK 212
>SB_3774| Best HMM Match : DivIC (HMM E-Value=4.4)
Length = 158
Score = 116 bits (279), Expect = 1e-26
Identities = 55/75 (73%), Positives = 63/75 (84%)
Frame = +3
Query: 144 LQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 323
++L+V EK +NLRRL+AQRNELNAKVRMLR GSYVGEVVKPMDKKKVLVKVH
Sbjct: 82 VKLVVTEKIKNLRRLEAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVH 141
Query: 324 PEGKFVVDLDKNVDI 368
PEGKFVVD+DK +D+
Sbjct: 142 PEGKFVVDIDKGIDM 156
>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 779
Score = 94.7 bits (225), Expect = 5e-20
Identities = 50/115 (43%), Positives = 72/115 (62%)
Frame = +3
Query: 261 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 440
G VGEV+K + ++K +VK ++VV + VD + RVAL + T+ + LP
Sbjct: 56 GQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQVDKAKLKQGTRVALDMTTLTIMRYLPR 115
Query: 441 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+VDPLV M E + +Y VGGL +QI+E++EVIELP+ +PELF +GIA PK
Sbjct: 116 EVDPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIELPLTNPELFQRVGIAPPK 170
>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 87.0 bits (206), Expect = 1e-17
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Frame = +3
Query: 126 ITKIEELQLIVAEKSQNLRRLQAQRN---ELNAKVRMLRXXXXXXXXXGSYVGEVVKPMD 296
+ +I++ L+ E QN RL+ Q E +KV LR VG + + +D
Sbjct: 260 LDRIKDFLLMEEEFIQNQERLKPQEEKHEEERSKVDDLRGTPMS-------VGNLEEIID 312
Query: 297 KKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVE 476
+V + V + VD + + C V L ++ + + +L + DP+V++M +E
Sbjct: 313 DNHAIVSTSVGSEHYVSILSFVDKDLLEPGCTVLLNHKVHAVVGVLSDDADPMVTVMKLE 372
Query: 477 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
K P +Y +GGLD QI+EIKE +ELP+ HPEL++ +GI PK
Sbjct: 373 KAPQESYADIGGLDTQIQEIKESVELPLTHPELYEEMGIKPPK 415
>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
Length = 400
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/68 (50%), Positives = 47/68 (69%)
Frame = +3
Query: 402 RNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFD 581
RN+ Y +H LP K+DP V++M VE+ PD TY +GG +QI +++EV+E P+ HPE F
Sbjct: 53 RNK-YQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIDKLREVVETPLLHPERFV 111
Query: 582 ALGIAQPK 605
LGI PK
Sbjct: 112 NLGIEPPK 119
>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
Length = 369
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/112 (29%), Positives = 62/112 (55%)
Frame = +3
Query: 270 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 449
+G+ ++ +D+ +V + V + +D + + VAL S L ILP + D
Sbjct: 88 IGQFLEAVDQNTGIVASTTGSNYYVRILSTIDKELLKPSASVALHKHSNALVDILPPEAD 147
Query: 450 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
++++ E+ P+ +Y +GG+D Q +EI+E +ELP+ H EL+ +GI P+
Sbjct: 148 SSIAMLTNEEKPNVSYAEIGGMDIQKQEIREAVELPLTHFELYKQIGIDPPR 199
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 44.8 bits (101), Expect = 5e-05
Identities = 16/38 (42%), Positives = 29/38 (76%)
Frame = +3
Query: 492 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+++ +GGL QI+ ++E+IE+P+ +PELF A G+ P+
Sbjct: 254 SFQSIGGLKTQIQAVREMIEMPLTNPELFTAYGVPPPR 291
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +3
Query: 477 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
+VP + VGG + +++KE +E P+KHPE F LGI P+
Sbjct: 530 EVPKVHWSDVGGNEMIKRKLKEAVEWPLKHPEAFQRLGIRPPR 572
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +3
Query: 477 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA 584
K+PD +++ VGGLD +EI + I+LP+ HPELF A
Sbjct: 805 KIPDISWKDVGGLDSVKEEILDTIQLPLLHPELFAA 840
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +3
Query: 495 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
++ VGGL+KQI+ +KE+I P+ +PE+FD I P+
Sbjct: 883 FDSVGGLNKQIQALKEMILFPLVYPEVFDKFKITPPR 919
>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/80 (32%), Positives = 42/80 (52%)
Frame = +3
Query: 366 INDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEV 545
I DVT+ + N +Y ++ K + + + V DS ++ GLD IK +KE+
Sbjct: 174 IEDVTS----VIDNNAYV---VITEKTNINIESVKVGSSVDSGNIILSGLDDSIKMLKEL 226
Query: 546 IELPVKHPELFDALGIAQPK 605
++ P+ +PE F LGI PK
Sbjct: 227 VQFPLYYPESFSHLGINGPK 246
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +3
Query: 471 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
V ++ + ++ VGGL+ + +++ IE P+ HPE F +G+ +P+
Sbjct: 475 VVRLQPTRWDDVGGLEGVKQALRQAIEWPLLHPEAFARMGLRRPR 519
>SB_30385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/80 (32%), Positives = 42/80 (52%)
Frame = +3
Query: 366 INDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEV 545
I DVT+ + N +Y ++ K + + + V DS ++ GLD IK +KE+
Sbjct: 4 IEDVTS----VIDNNAYV---VITEKTNINIESVKVGSSVDSGNIILSGLDDSIKMLKEL 56
Query: 546 IELPVKHPELFDALGIAQPK 605
++ P+ +PE F LGI PK
Sbjct: 57 VQFPLYYPESFSHLGINGPK 76
>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +3
Query: 300 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 479
K ++K + + + V+ ++T V + +SY + + LP + D V M V++
Sbjct: 88 KCAVIKTSTRQTYFLPVIGLVEPENLTPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDE 147
Query: 480 VPDSTYEMVGGLDKQIKEI 536
P Y +GGLD+QI+E+
Sbjct: 148 RPTEQYSDIGGLDQQIQEM 166
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/45 (33%), Positives = 31/45 (68%)
Frame = +3
Query: 471 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
V +VP+ +++ +GGL+ +E++E+++ PV+HP+ F G+ K
Sbjct: 301 VVEVPNVSWDDIGGLEGVKRELQELVQYPVEHPDKFLKFGMTPSK 345
>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
Length = 340
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +3
Query: 471 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 605
V ++ + ++ VGGL+ + +++ IE P+ HPE F +G+ +P+
Sbjct: 4 VVRLQPTRWDDVGGLEGVKQALRQAIEWPLLHPEAFARMGLRRPR 48
>SB_30757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +2
Query: 374 CHGQLSCRSSQRKLYLTQNTTQQSRSSCV 460
CH LSC SQR L Q Q+SR CV
Sbjct: 114 CHVGLSCLKSQRTLRALQKALQRSRVECV 142
>SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)
Length = 201
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 333 KFVVDLDKNV---DINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEM 503
K ++D D V DIN+ T N + L +E+Y+ H++L K D + S +E T ++
Sbjct: 23 KALLDRDGKVCMLDINEKTGNETLKLLSENYSKHRVLFIKCD-VTSQPQMEAAFQRTKDV 81
Query: 504 VGGLD 518
G LD
Sbjct: 82 FGRLD 86
>SB_28977| Best HMM Match : AAA (HMM E-Value=0)
Length = 442
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 453 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 578
L S +++EK P+ + + GL+ + +KE + LP+K P LF
Sbjct: 83 LNSAIVMEK-PNVKWSDIAGLESAKEALKEAVILPIKFPHLF 123
>SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
Length = 541
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 363 DINDVTANCRVALRNESYTLHKILPNKVDPL 455
DI ++ C+VA E +TL + LPN +D L
Sbjct: 154 DIRPISLTCQVAKLMEGFTLSRALPNILDRL 184
>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 363 DINDVTANCRVALRNESYTLHKILPNKVDPL 455
DI ++ C+VA E +TL + LPN +D L
Sbjct: 525 DIRPISLTCQVAKLMEGFTLSRALPNILDRL 555
>SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
Length = 476
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 363 DINDVTANCRVALRNESYTLHKILPNKVDPL 455
DI ++ C+VA E +TL + LPN +D L
Sbjct: 89 DIRPISLTCQVAKLMEGFTLSRALPNILDRL 119
>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
Length = 1065
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 351 DKNVDINDVTANCRVALRNESYTLHKILPNKVDPL 455
D N+ + + +CR A+ E+++ H PN VDPL
Sbjct: 215 DCNLQLTCLQPSCRYAVLVEAFSSHPNDPNAVDPL 249
>SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +3
Query: 372 DVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQI 527
D+ + L + LHK++PN V+ + + ++ D ++ ++G D ++
Sbjct: 463 DLVKKAQTTLATANLRLHKVVPNSVEVMEAFPAEDRAKDISWGVLGPRDGRV 514
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 348 LDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVP 485
+D+N + + N +L L ++PN VD + M++KVP
Sbjct: 952 IDENFKVWLIEINVNPSLSTSCQVLKDLMPNMVDNTIRPEMIQKVP 997
>SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 42 HESQ*RNMTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQ 191
HE+Q R + LT E KG+ F KI+ELQ V + +Q ++ L+
Sbjct: 123 HEAQRREVVLTKDYERAVEKGDNF----YAKIDELQEKVDDTTQKIKLLE 168
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 363 DINDVTANCRVALRNESYTLHKILP---NKVDP 452
DI + C+VA E +TL++ILP K+DP
Sbjct: 1274 DIRPIALTCQVAKVMEGFTLNRILPPIMRKLDP 1306
>SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 1001
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -2
Query: 461 RHKRIDFVG*YFV*GIAFVAKSDTTIGRDIVNINVLV 351
R + IDF Y GI +A++DTT+G +VN++ ++
Sbjct: 390 RSRVIDFSSPYGEVGIGILARTDTTLG-SVVNMDFMI 425
>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1786
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 276 EVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPL 455
+ V P+ K + VHP K D+ ++ C++A E +TL ++LP+ ++ L
Sbjct: 309 DFVPPLLKSAI---VHPISKQTPPKSIKDDLRPISLTCQMAKICEGFTLIRVLPSVLEQL 365
>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 808
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +3
Query: 420 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPE 572
L+K+L ++ S+ +E+ + + V GL+K+IK++++ EL K +
Sbjct: 511 LNKVLERNMELESSVSAMERKNKALEKSVNGLEKEIKKMEQNYELKSKESD 561
>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
Length = 1799
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 363 DINDVTANCRVALRNESYTLHKILPNKVDPL 455
DI ++ C+VA E TL + LPN +D L
Sbjct: 473 DIRPISLTCQVAKLMEGLTLSRALPNILDRL 503
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 134 LGYVVRAKTLTLHRVHFHFSRESHI 60
LG + RA+T+ LHR SRE H+
Sbjct: 118 LGELERAQTVLLHRASSRHSREEHV 142
>SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 363 DINDVTANCRVALRNESYTLHKILPNKVDPL 455
DI ++ C+VA E TL + LPN +D L
Sbjct: 511 DIRPISLTCQVAKLMEGLTLSRALPNILDRL 541
>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1837
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 363 DINDVTANCRVALRNESYTLHKILP---NKVDP 452
DI + C+VA E +TL +ILP K+DP
Sbjct: 1491 DIRPIALTCQVAKVMEGFTLSRILPPIMRKLDP 1523
>SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 555 PVKHPELFDALGIAQP 602
PV+HPE F ALG+ P
Sbjct: 2 PVQHPEEFSALGLTHP 17
>SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 437 QQSRSSCVA--HDGRESAGLYLRNGRWSRQTNQGDQRG 544
Q+S++S + GR G YL +G SRQ ++ +QRG
Sbjct: 856 QKSQASSLPKIEHGRSLVGNYLSDGENSRQEHRDEQRG 893
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 555 PVKHPELFDALGIAQP 602
PV+HPE F ALG+ P
Sbjct: 2 PVQHPEEFSALGLTHP 17
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,324,916
Number of Sequences: 59808
Number of extensions: 322205
Number of successful extensions: 855
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -